RNA id: TU51558



Basic Information


Item Value
RNA id TU51558
length 13
RNA type TUCP
GC content 0.39
exon number 1
gene id G45351
representative False

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8159516 ~ 8198909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACATTGTCATAAAGTGTGTGCACAACAACAAGGAGGGCTGTGTTTGGTGGGCTTAGTCTGGAAAACACTACAGTAAAACCCAAATTCTTTTAAAATGGCTGCTGCTCATCGTCTAGTGATTGTACGCCACGGCGAGAGCACCTGGAATCAGGAGAACCGTTTCTGTGGGTGGTTTGATGCAGACCTCAGTGAAAAGGGTCTGGAGGAAGCAAAGCGTGGTGCACAGGCCATCAAAGATGCAGGCATGAAGTTTGATGTGTGCTACACCTCCGTTCTGAAGCGTGCTATCAAGACTCTTTGGACCATCATGGAGATCACAGACCAGATGTGGCTGCCCGTAGTGCGCACCTGGCGTCTGAATGAACGTCACTATGGTGGTCTGACTGGTCTGAACAAGGCAGAGACAGCAGCCAAGCACGGAGAAGAGCAGGTCAAGATCTGGCGCAGATCATTCGATATTCCCCCTCCTACTATGGATAAGGACCATCCATACCACAAGATCATCAGTGAGGTAAGACAAAGAGATCAGATGTTTATATATATATATATATATATATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51601 lncRNA upstream 49 8159245 ~ 8159467 (+) True G45392
TU51600 lncRNA upstream 623 8158636 ~ 8158893 (+) True G45391
TU51563 lncRNA upstream 1981 8154796 ~ 8157535 (+) True G45356
TU51588 lncRNA upstream 13436 8133207 ~ 8146080 (+) True G45381
TU51547 lncRNA upstream 90272 8069032 ~ 8069244 (+) True G45346
TU51566 lncRNA downstream 35946 8234738 ~ 8238406 (+) True G45359
TU51658 lncRNA downstream 133787 8332579 ~ 8333478 (+) True G45438
TU51780 lncRNA downstream 373902 8572694 ~ 8574744 (+) True G45528
TU51796 lncRNA downstream 484189 8682981 ~ 8739598 (+) True G45543
TU51884 lncRNA downstream 506541 8705333 ~ 8705667 (+) True G45630
CI01000006_08108713_08122179.mRNA mRNA upstream 37152 8108563 ~ 8122364 (+) True CI01000006_08108713_08122179
CI01000006_08025159_08032131.mRNA mRNA upstream 126893 8025159 ~ 8032623 (+) True CI01000006_08025159_08032131
CI01000006_07939608_07940846.mRNA mRNA upstream 218101 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
CI01000006_07757777_07795187.mRNA mRNA upstream 364258 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07699736_07726659.mRNA mRNA upstream 432519 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_08222787_08225568.mRNA mRNA downstream 23995 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
CI01000006_08305571_08341681.mRNA mRNA downstream 106779 8305571 ~ 8341681 (+) True CI01000006_08305571_08341681
CI01000006_08366730_08400944.mRNA mRNA downstream 167298 8366090 ~ 8402325 (+) True CI01000006_08366730_08400944
CI01000006_08528828_08531392.mRNA mRNA downstream 330036 8528828 ~ 8531457 (+) True CI01000006_08528828_08531392
CI01000006_08673737_08674685.mRNA mRNA downstream 474788 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
TU51537 other upstream 137565 8019342 ~ 8021951 (+) True G45336
TU51448 other upstream 239161 7883867 ~ 7920355 (+) False G45265
TU51341 other upstream 475845 7621991 ~ 7683671 (+) False G45178
TU51004 other upstream 771632 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 988982 7169829 ~ 7170534 (+) True G44782
TU51552 other downstream 52 8198844 ~ 8198909 (+) False G45351
TU51557 other downstream 52 8198844 ~ 8198909 (+) True G45351
TU51562 other downstream 10763 8209555 ~ 8212388 (+) True G45355
TU51632 other downstream 620022 8818814 ~ 8834697 (+) True G45416
TU53040 other downstream 1957787 10156579 ~ 10159251 (+) False G46652

Expression Profile