RNA id: CI01000006_11388077_11391485.mRNA



Basic Information


Item Value
RNA id CI01000006_11388077_11391485.mRNA
length 1087
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000006_11388077_11391485
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11387494 ~ 11391485 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCACTTTGAGGGATCCAGCAACGTCACGCTGTTGTTTAATTTCTGGGATGTGCGTGGGCCTGCAGGGATGGTCCTGTCGGTCTTTGTAGTTCTACTGCTCACGATGCTCTACGAGCTTCTGAAAGTGTGGAAGATCACTGTGGGAAAACAGAAGCACTCCTCCGTTACACATCCATCCGCTCCAGTGTCATTCTCTCCTGAACAGTCGTGTTTCGCCCCTGTCATGAGGTGTCAAGAGGGAAGCTCTGCTCTGGCCAGCAGCCCCTCCGAGATCTCATTAGCTCCCACAGAGACTACTACGGCCACTGCTGACACCACCGCCTCTCCTAAGAAGAGCTGGCTTCTGCACTGCCTCCAGACCGCCATACACATCCTGCAGGTGACGCTAGGCTACATGCTAATGCTTTGCGTCATGTCCTACAACGTGTGGATCTTCCTGGGGGTCATCATGGGATCCGTCTTGGGCTACTTTTTGGCTTTTCCTCTCCTGAATCATATTTGAGAAGAGATGAAGGAATGGAAAACATTCATTTTAATTCACTAAGGATTCTAGATGAAGAGCAATGGGAAACCAAGGATTGGAAAATGCCAGGATTGTGTGCCCATGATCAGAGTTGTGCATTTTCAACGATAAGACGTGCAAGAAATGTAGATTGAACAAGGATGATTTTCTTTTTTTAAGGTTGGATTTTTAAGATCATGCATGATATCTTATTTAACTTCAGTCTGGTGATAACCAATTGTAAAATTGGTTAAAAATCATATTGTTAAAGTGTTTTAGAGGTTACATTTTAAACCTCATTGGAAACACAATATCTTATGCTAAGAACGGTGTTAAATGCATGTGATTTTTATATTTTACATGGTCGTGACCTTCGGTTCGAACAGTTCCTTTGAGAACGGTGATGTGCCTCTGACTGGTTTTAAACTTTCTACAATTACTGATGTAATTAATAAGCTAATTTTCTGTTACACAAATGAATGTTTAAATTCTGCTCTGTGAGATTTGCTTTAATGTAGCTGGTGGTTTTCTGTTATTTTGGGAAATCACACTAGTTTTAACCCTTGTGATGAGTCTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54351 lncRNA downstream 95013 11291512 ~ 11292481 (-) True G47758
TU54350 lncRNA downstream 96543 11287635 ~ 11290951 (-) False G47758
TU54231 lncRNA downstream 271983 11111614 ~ 11115511 (-) True G47681
TU54223 lncRNA downstream 318446 11063673 ~ 11069048 (-) True G47673
TU54218 lncRNA downstream 331913 11054903 ~ 11055581 (-) True G47668
TU54403 lncRNA upstream 87621 11479106 ~ 11480792 (-) False G47806
TU54408 lncRNA upstream 87621 11479106 ~ 11482501 (-) True G47806
TU54414 lncRNA upstream 112093 11503578 ~ 11504962 (-) True G47812
TU54456 lncRNA upstream 248944 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA upstream 248944 11640429 ~ 11641264 (-) True G47853
CI01000006_11320839_11338355.mRNA mRNA downstream 49139 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_10676705_10699710.mRNA mRNA downstream 687612 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 877839 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_10453630_10483241.mRNA mRNA downstream 903488 10453613 ~ 10484006 (-) False CI01000006_10453630_10483241
CI01000006_10402704_10447782.mRNA mRNA downstream 938393 10402695 ~ 10449101 (-) True CI01000006_10402704_10447782
CI01000006_11459706_11462546.mRNA mRNA upstream 67803 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11530728_11535297.mRNA mRNA upstream 138881 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 204154 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11627878_11631177.mRNA mRNA upstream 235709 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11636228_11638176.mRNA mRNA upstream 244743 11636228 ~ 11638176 (-) True CI01000006_11636228_11638176
TU54208 other downstream 354367 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 899059 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3876538 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4410622 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 258878 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 942924 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 954707 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 954774 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 959274 12350759 ~ 12529810 (-) False G48450

Expression Profile