RNA id: CI01000006_11530728_11535297.mRNA



Basic Information


Item Value
RNA id CI01000006_11530728_11535297.mRNA
length 1358
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000006_11530728_11535297
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11530366 ~ 11535900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTAAAACTAAGATTCACAAAATAGAAATATGCATGTATTTGTCGAGATGAGACGGCATGATAGCCAATGACTCAGCCTCTCAGCTCATAAATCAGAGTGGATGAGCATCAAGTGGAACTCTGCAGATCACTCATGAGTAGCATACAAACACTGTACAGACCAGGCTCTCCATGCTGACCCACTGGCCCTGAAAGCATTCAGCCTAAAAATGACTCAGACAAAGTAAAATAAATAAATGAAGACCAACAGGAAGAACCCATTACATAAGCCATATGAAGTGATTTTGAGCAGAAAATAAAAAATTATTGCTACACAACTAGGGCCATTAGTTCAAACCTGAGTAAGCCAGAGAAAACCACTACAAATGCATGATGTGGCCAAGCTGAGAAGAATTTAAGAGTAGTGCAGGTTGAGAGCAGGAGTACTTCCTGTTCTTTAGCGTGTCGGAGTGGGCCGGGGGGCTATTGATCCTGTGCGTACTCACAGAACATGGTCCACCTACAGATTTTGGTTTTGAACAGCTCAGTGGTCATGACCCAGTGTCTGGAGAAAGAGAAGATTACCAGAGACTGCCTTCACAACGAGCAATATTCCCCCGGACAATGACGAATCCAGGGGATGAAAAGGATGTTCAATATCGACAAGGTCATTTTAATGACCTCTATCTACAAGGAATGACAGTGCCAGAGTTTACTGTATCTGTTCGAATGCAACAATCACAATCCATTCTGTATATGAACATTATGGATGCAATGACTCACAGCATCCCTGAGGCACCAGGCCCAGACATTAGGATGAGAAAGACACGATGGCTTGAACGAAGAGTGTTTATGGTAGTGTGTGAGGGTCCAAACAGGAAACCCAGTGGGACCATATATGGAGCGACCACTCCCCCAATTCCACCCACTCGTTCAGCGGTAATGCCAGGCAAACACATGGGGTATCTGTGTCATACAGGGAGACAGTTGGAAGGAAACAGAAGTCAGCTGTATTGAAGAACATATATTACAGAGCTTCTTTTTTTTTTTTTTTTTTCTGTGGCCAATGCTGTTTTTTAAAGTAAATAATCCGTAGCTCTGGGCTGCGAGTGTGCGTGGTGGGACTGCCGATGAAGGGAGGAAAAGCAGGAATGAAAGAATGACAAAACGCCCTTTCTTTAACACAGCACTAAGAAGTGCAGCACTGTGTACAGCATGTTCTGGCGATAAAGCTGATAGAATTTGTTAATTATCCCCACACAGACTGCAGTGGATGTTCACATCATGCACAGCTAAGCATTACAGATTAATTATTTAGAAAATGTATCAAAAACAATTCCCCACCTTTGCATAATAGACTTGTTTTCAGACTGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54414 lncRNA downstream 25404 11503578 ~ 11504962 (-) True G47812
TU54408 lncRNA downstream 47865 11479106 ~ 11482501 (-) True G47806
TU54403 lncRNA downstream 49574 11479106 ~ 11480792 (-) False G47806
TU54351 lncRNA downstream 237885 11291512 ~ 11292481 (-) True G47758
TU54350 lncRNA downstream 239415 11287635 ~ 11290951 (-) False G47758
TU54456 lncRNA upstream 104529 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA upstream 104529 11640429 ~ 11641264 (-) True G47853
TU54458 lncRNA upstream 109627 11645527 ~ 11648165 (-) True G47854
TU54287 lncRNA upstream 169027 11704927 ~ 11708257 (-) True G47705
TU54465 lncRNA upstream 229334 11765234 ~ 11765587 (-) True G47861
CI01000006_11459706_11462546.mRNA mRNA downstream 67761 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11388077_11391485.mRNA mRNA downstream 138881 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11320839_11338355.mRNA mRNA downstream 192011 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_10676705_10699710.mRNA mRNA downstream 830484 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 1020711 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_11596063_11609407.mRNA mRNA upstream 59739 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11627878_11631177.mRNA mRNA upstream 91294 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11636228_11638176.mRNA mRNA upstream 100328 11636228 ~ 11638176 (-) True CI01000006_11636228_11638176
CI01000006_11651067_11653761.mRNA mRNA upstream 115013 11650913 ~ 11654424 (-) False CI01000006_11651067_11653761
CI01000006_11659293_11664444.mRNA mRNA upstream 123033 11658933 ~ 11666250 (-) True CI01000006_11659293_11664444
TU54208 other downstream 497239 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 1041931 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 4019410 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4553494 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 114463 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 798509 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 810292 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 810359 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 814859 12350759 ~ 12529810 (-) False G48450

Expression Profile