RNA id: CI01000006_11636228_11638176.mRNA


Basic Information

Item Value
RNA id CI01000006_11636228_11638176.mRNA
length 512
RNA type mRNA
GC content 0.60
exon number 3
gene id CI01000006_11636228_11638176
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11636228 ~ 11638176 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCGGCCATGCTCCGCCCATTCCCTCGGTACAGCCGCCCAATCAGCCACTGCCTGACCTGCTGCGGAGCTGCGTTGTGCTCCCTTCCCCATCCACGCGCCTGAGCCCTTGCACCATCGAGATGGAGTCCATGATTGTGGTGACGGAGTATGAGCCCAGTGGTGGCTCAGGGCAGGAGGGCGGAGAGGAGGAGGAGGTGGAGGACATGGACAGCTCGGAAACGCCAGAGCCGGCGTCATCAGGTCCGGTACCGCCCTTCCGGATGGCCTCCTGTGATCTTTTATCCCACACGATGGCCCGCCCGGAAGCGCTCTTCCCAGAACCGCAGGAGCACAGAGGGCTGAACGGACGATATATTTACCCATCACTGCCCTACTCGCCAATCACCTCCCCTCACTCGTCTCCACGCCTCCCTCGAAGACCAACTGTGGAGTCTCATCGTGTGTCCATCACAGACTTGCAGGACTGCGTGCAACTCAACCAGTACAAGCTGAAAGATGAGATTGGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54414 lncRNA downstream 131266 11503578 ~ 11504962 (-) True G47812
TU54408 lncRNA downstream 153727 11479106 ~ 11482501 (-) True G47806
TU54403 lncRNA downstream 155436 11479106 ~ 11480792 (-) False G47806
TU54351 lncRNA downstream 343747 11291512 ~ 11292481 (-) True G47758
TU54350 lncRNA downstream 345277 11287635 ~ 11290951 (-) False G47758
TU54456 lncRNA upstream 2253 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA upstream 2253 11640429 ~ 11641264 (-) True G47853
TU54458 lncRNA upstream 7351 11645527 ~ 11648165 (-) True G47854
TU54287 lncRNA upstream 66751 11704927 ~ 11708257 (-) True G47705
TU54465 lncRNA upstream 127058 11765234 ~ 11765587 (-) True G47861
CI01000006_11627878_11631177.mRNA mRNA downstream 5051 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11596063_11609407.mRNA mRNA downstream 26821 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11530728_11535297.mRNA mRNA downstream 100328 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11459706_11462546.mRNA mRNA downstream 173623 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11388077_11391485.mRNA mRNA downstream 244743 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11651067_11653761.mRNA mRNA upstream 12737 11650913 ~ 11654424 (-) False CI01000006_11651067_11653761
CI01000006_11659293_11664444.mRNA mRNA upstream 20757 11658933 ~ 11666250 (-) True CI01000006_11659293_11664444
CI01000006_11672314_11695885.mRNA mRNA upstream 33678 11671854 ~ 11695920 (-) True CI01000006_11672314_11695885
CI01000006_11715016_11740679.mRNA mRNA upstream 76529 11714705 ~ 11740763 (-) True CI01000006_11715016_11740679
CI01000006_11753992_11763149.mRNA mRNA upstream 115552 11753728 ~ 11763149 (-) True CI01000006_11753992_11763149
TU54208 other downstream 603101 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 1147793 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 4125272 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4659356 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 12187 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 696233 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 708016 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 708083 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 712583 12350759 ~ 12529810 (-) False G48450

Expression Profile