RNA id: TU55095



Basic Information


Item Value
RNA id TU55095
length 1453
RNA type TUCP
GC content 0.39
exon number 2
gene id G48450
representative False

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12350759 ~ 12571925 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACTGCTATTGATTTATAACAGGGCGGATGTTAGGGCTCTCTCGATTTCCCTGTCTGAAGCTAGAGGACAAGAGGCTGGTATCGCAACTTATCAGGCGTACACGGCCAATTGGGGTAGTAACCCTAGTGATAAGGATATTAAGAAAACAGTTGTGGACATTGAGACGGACTACATCTTCCTGGTGCCAACCCAGACGGCCCTGTACCTCCACACTGACCATGCCAAAACTGCACGAACCTACTCCTACCTGTTCAGTGAGCCCTCTCGCATGCCTATCTTCCCGCTCTGGATGGGTGCCGATCACGCTGACGACCTGCAGTATGTGTTTGGGAAGCCTTTCACCACTCCTTTGGGCTACTTTCCTCGCCATCGTGACGTCTCCAGATACATGATTGCCTACTGGACCAATTTTGCTCAAACTGGTGACCCTAACAAAGGTGAGTCCAGTGTTCCTGTAACCTGGCCTGAGTTCGCAGGCACTGGCCATAAGTACCTAGACATACACAACAGTATGAACAAGAACAGTGTGAAGGAGATGTTGAGAACGCGTTTGGTTTACTACTGGACTACCGTCTTTTCCAGCTACCCTACTGTCAAGAAGAACTGAGCAATGCTAACCTGACTACAAAATCATTTAGCAGTTAATATCATGCTAAGATTCATGCAATAAACAAAATATATGATGATCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAACAAAAATCCCCAAAAAAAAGCTGCTATATAAATATTTTTCTTTGATCAGCCAGAGCCTTCGGGATCAACCTGGCTCATGTTACATGTTCTTAATTTGGGCCTGCTCTGTTTAAGTAAATGATCGAACCATCTTGAAGGCAAAGGTGCTACTGATTTATAAAGGAAATGCATCGAGCAGAGGCAGACCTGTATATCCATTTCAAATGTATTCATTAATTATTGCAAGAGTTATTTATAAAATATGAATAGCAATATATATATATTATTTGTTTTTGTTTTTTTTGTTTTGAATTAAAAGGAATTGCTGGAATTGAGTATTGAAAAAGATACTGATCAAATTTATGAAAAAGTAAAGTCTTTATTTCACGGTGATAAACTTCTTAAAGATTAAGGGAAACGTTATGTTTACAAAACCTGTGTGGTAGGAAGTTTTGCCAAAAAAAAGTAATAAAAAGGAAACAAAAATCCTTTCAATCCTATGTTGATAGTCTGGAATAAGACACGTTTCTCTGAGTGACACTTTGGTATCTAAAAGGAGATGGTGGTTGAACAGTGTCCTCGTATATATTTATTTTCTTTGGTCTTTGTTTCGGGAAAATATTCAGAATGCAGCTTTGTGAATCAGCCTTGAAAATAACATTGCTTGCAATTATGGAAATTCTCACTAGTCAAATAGCTCCGTGGTGGATTCTGATTGGCTAGTTGATTCTTGAGGCTTGCTGCATCGTATTTGCACATTTTAAGATGTCGTTTTGAGATCTGAAAACAAATTCTCTCTCTCGTCTTAGAATCACATTTATTCCATTATTTTCCAGTGTTGTAAATTGAAATTTAAAAACCTTGAGTGAGCCATTCTCAAAATAACCATTGACAAATGTTGGTTCTCAGTATTTGGGTCGGCAGATGGCATCTTATCTGCTTCTTTAAGGGACTTGCGTGTTATCAAACTCACCAAGATGTTCTGTTGTGTGAGCTTCTGTTCATTTTAGTCCCTGTTTATAGACTGATCGCAATGTTTGATGACAACCAAATACAAGTCATGGGTATTTAACAGAGAAATTTAGCAGCACTTTACTTCTCAGATGCTTATTTCCTCAGCATTCAAATAGCCACCACACTGAACCCTAAAGATTTGGGATGACACTAAGAAGTGTTGCTTGGAACGGAGAATGTGCATCTACACATAGAACTTGGTATCATTGTAATTTGGGTTGGGTGGGGAAGTATTTGGTGGTGTGTGTGTGTGTGTGACCAACACCTGTTTTCTCTGACACCACTAATGAGAGATGTTAATGTTGGATAATAAGCCAAGAATCTCATAACACTGTCATCTCTTGTTTTAAAGGTGGGATGGGGGTTTCAGACTGTAAGAGAATTCCTGACCTGTCCACCTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55066 lncRNA downstream 172565 12171561 ~ 12178194 (-) True G48422
TU55147 lncRNA downstream 190676 12159558 ~ 12160083 (-) True G48490
TU55057 lncRNA downstream 268132 12082243 ~ 12082627 (-) True G48413
TU55035 lncRNA downstream 299075 12051341 ~ 12051684 (-) True G48393
TU55027 lncRNA downstream 306995 12043548 ~ 12043764 (-) True G48385
TU55239 lncRNA upstream 82445 12653629 ~ 12653890 (-) True G48571
TU55244 lncRNA upstream 128288 12699472 ~ 12699782 (-) True G48576
TU55245 lncRNA upstream 128885 12700069 ~ 12700268 (-) True G48577
TU55246 lncRNA upstream 130406 12701590 ~ 12701857 (-) True G48578
TU55247 lncRNA upstream 138086 12709270 ~ 12709479 (-) True G48579
CI01000006_12348300_12348961.mRNA mRNA downstream 1376 12347180 ~ 12349383 (-) False CI01000006_12348300_12348961
CI01000006_12309164_12310107.mRNA mRNA downstream 40652 12307563 ~ 12310107 (-) True CI01000006_12309164_12310107
CI01000006_12289635_12293874.mRNA mRNA downstream 56885 12289515 ~ 12293874 (-) True CI01000006_12289635_12293874
CI01000006_12274550_12280868.mRNA mRNA downstream 69891 12273081 ~ 12280868 (-) True CI01000006_12274550_12280868
CI01000006_12252567_12267751.mRNA mRNA downstream 83008 12251931 ~ 12267751 (-) True CI01000006_12252567_12267751
CI01000006_12583905_12591335.mRNA mRNA upstream 12600 12583784 ~ 12591335 (-) True CI01000006_12583905_12591335
CI01000006_12647432_12651091.mRNA mRNA upstream 75819 12647003 ~ 12651091 (-) True CI01000006_12647432_12651091
CI01000006_12670692_12674459.mRNA mRNA upstream 99508 12670692 ~ 12674459 (-) True CI01000006_12670692_12674459
CI01000006_12677322_12678268.mRNA mRNA upstream 105978 12677162 ~ 12678268 (-) True CI01000006_12677322_12678268
CI01000006_12697606_12714750.mRNA mRNA upstream 126422 12697606 ~ 12714750 (-) True CI01000006_12697606_12714750
TU55106 other downstream 1688 12334409 ~ 12346649 (-) True G48451
TU55104 other downstream 1688 12346192 ~ 12346649 (-) False G48451
TU55105 other downstream 1688 12346259 ~ 12346649 (-) True G48451
TU54279 other downstream 696352 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU54208 other downstream 1317632 11030911 ~ 11033127 (-) True G47658

Expression Profile