RNA id: TU46257


Basic Information

Item Value
RNA id TU46257
length 687
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G40767
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 360009 ~ 484185 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAGTCAGAGAGGAGACTGAGATCGTGGGGGTCTCAGATGGAGCTCACTGAAGAGTTTGAGAGAGGTGTAAATCTCTTGCGCCCTTCAGTGGCTGATGAGAGTGTGCTCCTATATATATATAAATGCATAGTAAAATATATAAAACCTGTAGCTTGTAGTTTTGCCAATTTTTTTTTTTTTTTTTTTTTTATGGTTAGTAATTAATTTTATTGTCCATCTTTGTTAGCTATCCATCATCCATTTTCAGCTCTCCTTCTAATATTAGTTATCTCTCATCATCCAGTCTACAAATGTTCAATAAAAGGTTAGTTAAAAAAAAAAAATAACAAAAAAGTACAATTATTAAAGTGAAAGTTTTTTATAAAAGGTTTGCTGCAGTTGATCTACTAAAGTCTGTAATTATTACCAGTACAATATGAAACACAATACATTTTATTTTAGATTTTCACTATCGTTACAGCAAAATATCTGGCTACCTCAAACCAAGCTATGAATCTAAAGTAAATGTGAAAGTTCAGCTGTTAAAGTTAAAGACAAAGACACCAGAATATGATATTTATGAAATCTTCACTGCTCCTCTTCACTGGTTATCTGTCCCCACCAGAGGCTCATTCACCATTTTCTCAGCTAAAATAAAGAACAGGGATGCATGCTTTTTATTGGAGTTACATATCATATGACACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46313 lncRNA upstream 100570 353720 ~ 353963 (+) True G40811
TU46302 lncRNA upstream 149267 305007 ~ 305266 (+) True G40800
TU46301 lncRNA upstream 151306 303015 ~ 303227 (+) True G40799
TU46299 lncRNA upstream 155341 298960 ~ 299192 (+) True G40797
TU46298 lncRNA upstream 155807 298411 ~ 298726 (+) True G40796
TU46258 lncRNA downstream 1596 482804 ~ 484185 (+) False G40767
TU46265 lncRNA downstream 1596 482804 ~ 484185 (+) True G40767
TU46270 lncRNA downstream 7199 488407 ~ 492312 (+) False G40768
TU46268 lncRNA downstream 7667 488875 ~ 492312 (+) False G40768
TU46383 lncRNA downstream 47920 529128 ~ 551356 (+) True G40852
CI01000006_00423835_00428157.mRNA mRNA upstream 26164 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00418370_00420217.mRNA mRNA upstream 34216 418370 ~ 420317 (+) True CI01000006_00418370_00420217
CI01000006_00363989_00372189.mRNA mRNA upstream 82269 363989 ~ 372264 (+) True CI01000006_00363989_00372189
CI01000006_00315992_00319208.mRNA mRNA upstream 135147 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00297085_00312816.mRNA mRNA upstream 141478 297085 ~ 313055 (+) True CI01000006_00297085_00312816
CI01000006_00502041_00503898.mRNA mRNA downstream 20833 502041 ~ 504306 (+) True CI01000006_00502041_00503898
CI01000006_00537552_00548276.mRNA mRNA downstream 56244 537452 ~ 548591 (+) True CI01000006_00537552_00548276
CI01000006_00586425_00608567.mRNA mRNA downstream 104760 585968 ~ 609091 (+) True CI01000006_00586425_00608567
CI01000006_00612891_00618198.mRNA mRNA downstream 130779 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00647015_00654423.mRNA mRNA downstream 165807 647015 ~ 655017 (+) True CI01000006_00647015_00654423
TU46269 other downstream 7667 488875 ~ 493026 (+) True G40768
TU46746 other downstream 1210857 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2164454 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2354959 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 3248022 3729230 ~ 3734202 (+) False G41496

Expression Profile