RNA id: TU46258


Basic Information

Item Value
RNA id TU46258
length 662
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G40767
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 360009 ~ 484185 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACTCAATTCCGACACCATGCGGCCGCCTGACTCATTACAACACGAGAGGAAGTGAGTTTTACCTTCTTCTCTTTGGGCTCTTCCTCAAGCGTCAGAGCAAGGGAGCTCATAGGAAGATGCATTTTCATGGGGGCGCTGGAACGCATGGCTGCACAAAAAAGGGAAGAAAGTCAGAATTATCATGTTTCCAATTGAGGACATTTATGGTAATGGGTTAAGGGTGATTTAAATAGTAGTATGATGAAAAGCCCATAAAATAAAAAGATGGAAAATGATGCAGCTCTCTGACCAAACTTGCGGCTGAGCTCATGCAGGCGGTCATTGCGTCTCTCTATGGTGTTGAGCTGATCCTTTTGGCTGTATGCCATGTAGGCGGTGAAGGCCTGACCTGCGATCAGTATTCCAGCCAGCAGAGTCACTCCTGCCACCTTCAGGGCCTGATTGTTAGATCTGAGGTCCCATATTGATGGAAGATTGCTCACTTGGAGCTCTGATAAGTGGTCCATCGTTTCCGTCGGTCGACATTTCTTATCAATAGTCAGAAACTTTCCAAAATGTTGTCAATTTGCTTAAGGGATTTTTGTACCAGCTCTCTATTATGAAAATGTGAGAACTGAGAGTCCAGCGGTGGCACTCGGATGAAAGTGTCTAGAACAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46257 lncRNA upstream 1596 454533 ~ 481208 (+) False G40767
TU46313 lncRNA upstream 128841 353720 ~ 353963 (+) True G40811
TU46302 lncRNA upstream 177538 305007 ~ 305266 (+) True G40800
TU46301 lncRNA upstream 179577 303015 ~ 303227 (+) True G40799
TU46299 lncRNA upstream 183612 298960 ~ 299192 (+) True G40797
TU46270 lncRNA downstream 4222 488407 ~ 492312 (+) False G40768
TU46268 lncRNA downstream 4690 488875 ~ 492312 (+) False G40768
TU46383 lncRNA downstream 44943 529128 ~ 551356 (+) True G40852
TU46435 lncRNA downstream 142548 626733 ~ 630432 (+) True G40904
TU46441 lncRNA downstream 173517 657702 ~ 658109 (+) False G40910
CI01000006_00423835_00428157.mRNA mRNA upstream 54435 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00418370_00420217.mRNA mRNA upstream 62487 418370 ~ 420317 (+) True CI01000006_00418370_00420217
CI01000006_00363989_00372189.mRNA mRNA upstream 110540 363989 ~ 372264 (+) True CI01000006_00363989_00372189
CI01000006_00315992_00319208.mRNA mRNA upstream 163418 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00297085_00312816.mRNA mRNA upstream 169749 297085 ~ 313055 (+) True CI01000006_00297085_00312816
CI01000006_00502041_00503898.mRNA mRNA downstream 17856 502041 ~ 504306 (+) True CI01000006_00502041_00503898
CI01000006_00537552_00548276.mRNA mRNA downstream 53267 537452 ~ 548591 (+) True CI01000006_00537552_00548276
CI01000006_00586425_00608567.mRNA mRNA downstream 101783 585968 ~ 609091 (+) True CI01000006_00586425_00608567
CI01000006_00612891_00618198.mRNA mRNA downstream 127802 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00647015_00654423.mRNA mRNA downstream 162830 647015 ~ 655017 (+) True CI01000006_00647015_00654423
TU46274 other upstream 3610 475465 ~ 479194 (+) True G40772
TU46269 other downstream 4690 488875 ~ 493026 (+) True G40768
TU46746 other downstream 1207880 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2161477 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2351982 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 3245045 3729230 ~ 3734202 (+) False G41496

Expression Profile