Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU46265 |
| length | 526 |
| lncRNA type | antisense_over |
| GC content | 0.47 |
| exon number | 3 |
| gene id | G40767 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 360009 ~ 484185 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46257 | lncRNA | upstream | 1596 | 454533 ~ 481208 (+) | False | G40767 |
| TU46313 | lncRNA | upstream | 128841 | 353720 ~ 353963 (+) | True | G40811 |
| TU46302 | lncRNA | upstream | 177538 | 305007 ~ 305266 (+) | True | G40800 |
| TU46301 | lncRNA | upstream | 179577 | 303015 ~ 303227 (+) | True | G40799 |
| TU46299 | lncRNA | upstream | 183612 | 298960 ~ 299192 (+) | True | G40797 |
| TU46270 | lncRNA | downstream | 4222 | 488407 ~ 492312 (+) | False | G40768 |
| TU46268 | lncRNA | downstream | 4690 | 488875 ~ 492312 (+) | False | G40768 |
| TU46383 | lncRNA | downstream | 44943 | 529128 ~ 551356 (+) | True | G40852 |
| TU46435 | lncRNA | downstream | 142548 | 626733 ~ 630432 (+) | True | G40904 |
| TU46441 | lncRNA | downstream | 173517 | 657702 ~ 658109 (+) | False | G40910 |
| CI01000006_00423835_00428157.mRNA | mRNA | upstream | 54435 | 423093 ~ 428369 (+) | True | CI01000006_00423835_00428157 |
| CI01000006_00418370_00420217.mRNA | mRNA | upstream | 62487 | 418370 ~ 420317 (+) | True | CI01000006_00418370_00420217 |
| CI01000006_00363989_00372189.mRNA | mRNA | upstream | 110540 | 363989 ~ 372264 (+) | True | CI01000006_00363989_00372189 |
| CI01000006_00315992_00319208.mRNA | mRNA | upstream | 163418 | 315062 ~ 319386 (+) | True | CI01000006_00315992_00319208 |
| CI01000006_00297085_00312816.mRNA | mRNA | upstream | 169749 | 297085 ~ 313055 (+) | True | CI01000006_00297085_00312816 |
| CI01000006_00502041_00503898.mRNA | mRNA | downstream | 17856 | 502041 ~ 504306 (+) | True | CI01000006_00502041_00503898 |
| CI01000006_00537552_00548276.mRNA | mRNA | downstream | 53267 | 537452 ~ 548591 (+) | True | CI01000006_00537552_00548276 |
| CI01000006_00586425_00608567.mRNA | mRNA | downstream | 101783 | 585968 ~ 609091 (+) | True | CI01000006_00586425_00608567 |
| CI01000006_00612891_00618198.mRNA | mRNA | downstream | 127802 | 611987 ~ 618372 (+) | True | CI01000006_00612891_00618198 |
| CI01000006_00647015_00654423.mRNA | mRNA | downstream | 162830 | 647015 ~ 655017 (+) | True | CI01000006_00647015_00654423 |
| TU46274 | other | upstream | 3610 | 475465 ~ 479194 (+) | True | G40772 |
| TU46269 | other | downstream | 4690 | 488875 ~ 493026 (+) | True | G40768 |
| TU46746 | other | downstream | 1207880 | 1692065 ~ 1695821 (+) | True | G41170 |
| TU47032 | other | downstream | 2161477 | 2645662 ~ 2660570 (+) | True | G41424 |
| TU47211 | other | downstream | 2351982 | 2836167 ~ 2839421 (+) | True | G41591 |
| TU47109 | other | downstream | 3245045 | 3729230 ~ 3734202 (+) | False | G41496 |
