RNA id: TU46989


Basic Information

Item Value
RNA id TU46989
length 224
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G41387
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2273046 ~ 2273269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGGATCATGTGACACTGAAAACTGGAGTAACGATGCTGAAAATTCAGCTTTGCAACACAGAAATAAATAATATTTTAAGGTATATTAAAATAGAAAACCATAATTTTAAATTGTAATAATATTTCACAATATTATTGTTTTTCTGTATTTACTATGAAATAAATGCAGCCTTAATGAGCATAAGAGACTTTGTTCAAAAACATTAAAAATAGCAATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46944 lncRNA upstream 3782 2267329 ~ 2269264 (+) True G41344
TU46962 lncRNA upstream 47069 2199065 ~ 2225977 (+) True G41360
TU46948 lncRNA upstream 110015 2162556 ~ 2163031 (+) True G41347
TU46927 lncRNA upstream 140699 2131993 ~ 2132347 (+) True G41328
TU46901 lncRNA upstream 142088 2085635 ~ 2130958 (+) True G41302
TU47048 lncRNA downstream 105061 2378330 ~ 2378627 (+) True G41440
TU47049 lncRNA downstream 141082 2414351 ~ 2414581 (+) True G41441
TU47057 lncRNA downstream 157555 2430824 ~ 2431137 (+) True G41449
TU47060 lncRNA downstream 163135 2436404 ~ 2436629 (+) True G41452
TU47061 lncRNA downstream 163961 2437230 ~ 2437452 (+) True G41453
CI01000006_02241091_02259573.mRNA mRNA upstream 13407 2241091 ~ 2259639 (+) True CI01000006_02241091_02259573
CI01000006_02181904_02185719.mRNA mRNA upstream 86754 2180910 ~ 2186292 (+) True CI01000006_02181904_02185719
CI01000006_02157297_02159922.mRNA mRNA upstream 113078 2157297 ~ 2159968 (+) True CI01000006_02157297_02159922
CI01000006_02134157_02143363.mRNA mRNA upstream 129286 2134157 ~ 2143760 (+) True CI01000006_02134157_02143363
CI01000006_02116526_02125887.mRNA mRNA upstream 146926 2115918 ~ 2126120 (+) True CI01000006_02116526_02125887
CI01000006_02274089_02276641.mRNA mRNA downstream 622 2273891 ~ 2276681 (+) True CI01000006_02274089_02276641
CI01000006_02374902_02382000.mRNA mRNA downstream 101563 2374832 ~ 2382401 (+) True CI01000006_02374902_02382000
CI01000006_02396895_02399927.mRNA mRNA downstream 123199 2396468 ~ 2399951 (+) True CI01000006_02396895_02399927
CI01000006_02490349_02491048.mRNA mRNA downstream 217080 2490349 ~ 2491118 (+) True CI01000006_02490349_02491048
CI01000006_02531899_02588907.mRNA mRNA downstream 258547 2531816 ~ 2589763 (+) True CI01000006_02531899_02588907
TU46746 other upstream 577225 1692065 ~ 1695821 (+) True G41170
TU46269 other upstream 1780020 488875 ~ 493026 (+) True G40768
TU46261 other upstream 1789711 480632 ~ 483335 (+) False G40767
TU46274 other upstream 1793852 475465 ~ 479194 (+) True G40772
TU47032 other downstream 372393 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 562898 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 1455961 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 1460829 3734098 ~ 3734202 (+) False G41496
TU47107 other downstream 1460829 3734098 ~ 3734202 (+) False G41496

Expression Profile