RNA id: TU47061


Basic Information

Item Value
RNA id TU47061
length 223
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G41453
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2437230 ~ 2437452 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGCTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCTTTAAGACCAGGAATATATATTATGATAAATAAGATGCAATTCAAATTGACTTTAAATGCATAATATAAGTCACTTCCTATATTTTCTAGTGCAAACTTGCTCTTGTTTAGATGCATAAAAACATCTTTTGAAGAAATATTTGACATCAAAAATACAAATAGCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47060 lncRNA upstream 601 2436404 ~ 2436629 (+) True G41452
TU47057 lncRNA upstream 6093 2430824 ~ 2431137 (+) True G41449
TU47049 lncRNA upstream 22649 2414351 ~ 2414581 (+) True G41441
TU47048 lncRNA upstream 58603 2378330 ~ 2378627 (+) True G41440
TU46989 lncRNA upstream 163961 2273046 ~ 2273269 (+) True G41387
TU47065 lncRNA downstream 5160 2442612 ~ 2442976 (+) True G41457
TU47069 lncRNA downstream 8272 2445724 ~ 2445934 (+) True G41461
TU47027 lncRNA downstream 172779 2610231 ~ 2626186 (+) False G41423
TU47030 lncRNA downstream 186263 2623715 ~ 2626186 (+) True G41423
TU47090 lncRNA downstream 194762 2632214 ~ 2632830 (+) True G41482
CI01000006_02396895_02399927.mRNA mRNA upstream 37279 2396468 ~ 2399951 (+) True CI01000006_02396895_02399927
CI01000006_02374902_02382000.mRNA mRNA upstream 54829 2374832 ~ 2382401 (+) True CI01000006_02374902_02382000
CI01000006_02274089_02276641.mRNA mRNA upstream 160549 2273891 ~ 2276681 (+) True CI01000006_02274089_02276641
CI01000006_02241091_02259573.mRNA mRNA upstream 177591 2241091 ~ 2259639 (+) True CI01000006_02241091_02259573
CI01000006_02181904_02185719.mRNA mRNA upstream 250938 2180910 ~ 2186292 (+) True CI01000006_02181904_02185719
CI01000006_02490349_02491048.mRNA mRNA downstream 52897 2490349 ~ 2491118 (+) True CI01000006_02490349_02491048
CI01000006_02531899_02588907.mRNA mRNA downstream 94364 2531816 ~ 2589763 (+) True CI01000006_02531899_02588907
CI01000006_02613864_02614742.mRNA mRNA downstream 176302 2613754 ~ 2614760 (+) True CI01000006_02613864_02614742
CI01000006_02616480_02616828.mRNA mRNA downstream 179028 2616480 ~ 2616839 (+) True CI01000006_02616480_02616828
CI01000006_02665949_02677083.mRNA mRNA downstream 228497 2665949 ~ 2677215 (+) True CI01000006_02665949_02677083
TU46746 other upstream 741409 1692065 ~ 1695821 (+) True G41170
TU46269 other upstream 1944204 488875 ~ 493026 (+) True G40768
TU46261 other upstream 1953895 480632 ~ 483335 (+) False G40767
TU46274 other upstream 1958036 475465 ~ 479194 (+) True G40772
TU47032 other downstream 208210 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 398715 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 1291778 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 1296646 3734098 ~ 3734202 (+) False G41496
TU47107 other downstream 1296646 3734098 ~ 3734202 (+) False G41496

Expression Profile