RNA id: TU50984


Basic Information

Item Value
RNA id TU50984
length 343
lncRNA type intronic
GC content 0.29
exon number 1
gene id G44852
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7315211 ~ 7315553 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGACTCTGAACTGCTGAACCTTACATCGTCTCCTCCAGTCATACTTCATAAGTGCACGGTACTGGTTTATTGAGGAAATATATGGGTCAATGAGTATATAAGAGTGTCTATGATAAAGAAGTGGAGAGATGTTTAAAAAATGTAGTTTAAAATGCATGTGCTGAGTTCTCAGCTATTAAGTCATATTTATGATGTATCAAAATGTAAAATATTAATTAAGGTGTTTAGACTCACATGCAAGGTGTAATTAAATATGTTTTTACTTTTTACTTGATATATTTAGAGTCATTAAACTGAAAATGTTATAGAAAATTATATAAAAGTTAAGAAACTTATTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50983 lncRNA upstream 77 7314825 ~ 7315134 (+) True G44851
TU50917 lncRNA upstream 2954 7222922 ~ 7312257 (+) True G44793
TU50948 lncRNA upstream 141764 7173217 ~ 7173447 (+) True G44821
TU50918 lncRNA upstream 150504 7162480 ~ 7164707 (+) True G44794
TU50945 lncRNA upstream 251044 7063827 ~ 7064167 (+) True G44818
TU50985 lncRNA downstream 168 7315721 ~ 7315980 (+) True G44853
TU50986 lncRNA downstream 618 7316171 ~ 7316492 (+) True G44854
TU50987 lncRNA downstream 2530 7318083 ~ 7318298 (+) True G44855
TU50988 lncRNA downstream 4162 7319715 ~ 7319933 (+) True G44856
TU50989 lncRNA downstream 4515 7320068 ~ 7320323 (+) True G44857
CI01000006_07254728_07260352.mRNA mRNA upstream 54777 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 64316 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07243073_07247934.mRNA mRNA upstream 67189 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07214841_07222648.mRNA mRNA upstream 92394 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07208843_07212249.mRNA mRNA upstream 102373 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07328380_07352585.mRNA mRNA downstream 12430 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07458458_07460310.mRNA mRNA downstream 142560 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07477200_07478617.mRNA mRNA downstream 161375 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07486574_07490054.mRNA mRNA downstream 170425 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 176634 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
TU50906 other upstream 144677 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1186536 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1205623 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1543436 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2191062 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 40799 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 306438 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 568314 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 703789 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 843963 8159516 ~ 8159528 (+) False G45351

Expression Profile