RNA id: TU50988


Basic Information

Item Value
RNA id TU50988
length 219
lncRNA type intronic
GC content 0.43
exon number 1
gene id G44856
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7319715 ~ 7319933 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTACCACTTCCCCCACCTCATTCTCCTATTCCTTCCTTTCACATCTCATAAAAACATGTCCATCGTTTTATGCGCCCATGAGATCTGTCAGATCATCAGGTCGGATTCCGCCAAATCAAATGCTCCACATCTCCTGCGTGCGCCTGCATAAATGAACCCATTGCGGCCCTGAGCAGTCCGAGCAGTCGGACCACTCCTGTGCCTTATTTTGTCTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50987 lncRNA upstream 1417 7318083 ~ 7318298 (+) True G44855
TU50986 lncRNA upstream 3223 7316171 ~ 7316492 (+) True G44854
TU50985 lncRNA upstream 3735 7315721 ~ 7315980 (+) True G44853
TU50984 lncRNA upstream 4162 7315211 ~ 7315553 (+) True G44852
TU50983 lncRNA upstream 4581 7314825 ~ 7315134 (+) True G44851
TU50989 lncRNA downstream 135 7320068 ~ 7320323 (+) True G44857
TU50982 lncRNA downstream 441 7320374 ~ 7320695 (+) False G44850
TU50981 lncRNA downstream 508 7320441 ~ 7320695 (+) True G44850
TU50991 lncRNA downstream 5765 7325698 ~ 7325942 (+) True G44859
TU51272 lncRNA downstream 138461 7460905 ~ 7461020 (+) True G45111
CI01000006_07254728_07260352.mRNA mRNA upstream 59281 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 68820 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07243073_07247934.mRNA mRNA upstream 71693 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07214841_07222648.mRNA mRNA upstream 96898 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07208843_07212249.mRNA mRNA upstream 106877 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07328380_07352585.mRNA mRNA downstream 8050 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07458458_07460310.mRNA mRNA downstream 138180 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07477200_07478617.mRNA mRNA downstream 156995 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07486574_07490054.mRNA mRNA downstream 166045 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 172254 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
TU50906 other upstream 149181 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1191040 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1210127 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1547940 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2195566 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 36419 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 302058 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 563934 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 699409 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 839583 8159516 ~ 8159528 (+) False G45351

Expression Profile