RNA id: TU50991


Basic Information

Item Value
RNA id TU50991
length 245
lncRNA type intronic
GC content 0.44
exon number 1
gene id G44859
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7325698 ~ 7325942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGGTCATGGATCGGCCATTATTAATGAAGGCCTCCATATTCAAGAGACCGAATATAATGGCAGTGCTGACCCTGGGGTCATTCATCTAGTGGGTGTGTATAACATGAAATTTAAGGAAACAGACAAATTTGAAGAAGAACAAATTATTTGTTGAAAAAAACAAACAAGCAACAGCTCAGCAGCACAAGCGCGAGAGAGAAAAGGGTAAGAGTCAGACTACGGACATCTAAGCAAACATGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50982 lncRNA upstream 5003 7320374 ~ 7320695 (+) False G44850
TU50981 lncRNA upstream 5003 7320441 ~ 7320695 (+) True G44850
TU50989 lncRNA upstream 5375 7320068 ~ 7320323 (+) True G44857
TU50988 lncRNA upstream 5765 7319715 ~ 7319933 (+) True G44856
TU50987 lncRNA upstream 7400 7318083 ~ 7318298 (+) True G44855
TU51272 lncRNA downstream 132452 7460905 ~ 7461020 (+) True G45111
TU51277 lncRNA downstream 146760 7472702 ~ 7472906 (+) True G45116
TU51281 lncRNA downstream 153367 7479309 ~ 7479512 (+) True G45120
TU51283 lncRNA downstream 155747 7481689 ~ 7481888 (+) True G45122
TU51295 lncRNA downstream 195216 7521158 ~ 7522043 (+) True G45134
CI01000006_07254728_07260352.mRNA mRNA upstream 65264 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 74803 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07243073_07247934.mRNA mRNA upstream 77676 7243073 ~ 7248022 (+) True CI01000006_07243073_07247934
CI01000006_07214841_07222648.mRNA mRNA upstream 102881 7214841 ~ 7222817 (+) True CI01000006_07214841_07222648
CI01000006_07208843_07212249.mRNA mRNA upstream 112860 7208480 ~ 7212838 (+) True CI01000006_07208843_07212249
CI01000006_07328380_07352585.mRNA mRNA downstream 2041 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07458458_07460310.mRNA mRNA downstream 132171 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07477200_07478617.mRNA mRNA downstream 150986 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07486574_07490054.mRNA mRNA downstream 160036 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 166245 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
TU50906 other upstream 155164 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1197023 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1216110 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1553923 5770089 ~ 5771775 (+) True G43896
TU47686 other upstream 2201549 5117206 ~ 5124149 (+) True G41996
TU51004 other downstream 30410 7356352 ~ 7387884 (+) True G44872
TU51341 other downstream 296049 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 557925 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 693400 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 833574 8159516 ~ 8159528 (+) False G45351

Expression Profile