RNA id: TU51281


Basic Information

Item Value
RNA id TU51281
length 204
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G45120
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7479309 ~ 7479512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAAGTTGGACAGGTGTTGTGTAGCCAAAAGTAGATTAAGTTATCCACTTAGTTACTAGGCTTTAGTGACAGATTTTTGTAAACTGACATACAACTCTTGGTTCCAAACAAATTAAATGCAAATTAAAATTAAATGCATTTATAAAGAATGGACAAATGTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTTGTTTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51277 lncRNA upstream 6403 7472702 ~ 7472906 (+) True G45116
TU51272 lncRNA upstream 18289 7460905 ~ 7461020 (+) True G45111
TU50991 lncRNA upstream 153367 7325698 ~ 7325942 (+) True G44859
TU50982 lncRNA upstream 158614 7320374 ~ 7320695 (+) False G44850
TU50981 lncRNA upstream 158614 7320441 ~ 7320695 (+) True G44850
TU51283 lncRNA downstream 2177 7481689 ~ 7481888 (+) True G45122
TU51295 lncRNA downstream 41646 7521158 ~ 7522043 (+) True G45134
TU51296 lncRNA downstream 42731 7522243 ~ 7522618 (+) True G45135
TU51297 lncRNA downstream 43885 7523397 ~ 7523630 (+) True G45136
TU51307 lncRNA downstream 62142 7541654 ~ 7541858 (+) True G45146
CI01000006_07477200_07478617.mRNA mRNA upstream 523 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07458458_07460310.mRNA mRNA upstream 18999 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07328380_07352585.mRNA mRNA upstream 126172 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07254728_07260352.mRNA mRNA upstream 218875 7254261 ~ 7260434 (+) True CI01000006_07254728_07260352
CI01000006_07249033_07250723.mRNA mRNA upstream 228414 7248438 ~ 7250895 (+) True CI01000006_07249033_07250723
CI01000006_07486574_07490054.mRNA mRNA downstream 6466 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07492187_07498391.mRNA mRNA downstream 12675 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07577082_07582303.mRNA mRNA downstream 96886 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07692311_07693192.mRNA mRNA downstream 212728 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07694812_07698078.mRNA mRNA downstream 215300 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
TU51004 other upstream 91425 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 308775 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1350634 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1369721 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1707534 5770089 ~ 5771775 (+) True G43896
TU51341 other downstream 142479 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 404355 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 539830 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 680004 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 718369 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463

Expression Profile