Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU51295 |
| length | 886 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G45134 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 7521158 ~ 7522043 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU51283 | lncRNA | upstream | 39270 | 7481689 ~ 7481888 (+) | True | G45122 |
| TU51281 | lncRNA | upstream | 41646 | 7479309 ~ 7479512 (+) | True | G45120 |
| TU51277 | lncRNA | upstream | 48252 | 7472702 ~ 7472906 (+) | True | G45116 |
| TU51272 | lncRNA | upstream | 60138 | 7460905 ~ 7461020 (+) | True | G45111 |
| TU50991 | lncRNA | upstream | 195216 | 7325698 ~ 7325942 (+) | True | G44859 |
| TU51296 | lncRNA | downstream | 200 | 7522243 ~ 7522618 (+) | True | G45135 |
| TU51297 | lncRNA | downstream | 1354 | 7523397 ~ 7523630 (+) | True | G45136 |
| TU51307 | lncRNA | downstream | 19611 | 7541654 ~ 7541858 (+) | True | G45146 |
| TU51309 | lncRNA | downstream | 21770 | 7543813 ~ 7544069 (+) | True | G45148 |
| TU51312 | lncRNA | downstream | 27756 | 7549799 ~ 7550010 (+) | True | G45151 |
| CI01000006_07492187_07498391.mRNA | mRNA | upstream | 22484 | 7492187 ~ 7498674 (+) | True | CI01000006_07492187_07498391 |
| CI01000006_07486574_07490054.mRNA | mRNA | upstream | 30582 | 7485978 ~ 7490576 (+) | True | CI01000006_07486574_07490054 |
| CI01000006_07477200_07478617.mRNA | mRNA | upstream | 42372 | 7476928 ~ 7478786 (+) | True | CI01000006_07477200_07478617 |
| CI01000006_07458458_07460310.mRNA | mRNA | upstream | 60848 | 7458113 ~ 7460310 (+) | False | CI01000006_07458458_07460310 |
| CI01000006_07328380_07352585.mRNA | mRNA | upstream | 168021 | 7327983 ~ 7353137 (+) | True | CI01000006_07328380_07352585 |
| CI01000006_07577082_07582303.mRNA | mRNA | downstream | 54355 | 7576398 ~ 7582313 (+) | True | CI01000006_07577082_07582303 |
| CI01000006_07692311_07693192.mRNA | mRNA | downstream | 170197 | 7692240 ~ 7694117 (+) | True | CI01000006_07692311_07693192 |
| CI01000006_07694812_07698078.mRNA | mRNA | downstream | 172769 | 7694812 ~ 7698434 (+) | True | CI01000006_07694812_07698078 |
| CI01000006_07699736_07726659.mRNA | mRNA | downstream | 177693 | 7699736 ~ 7726997 (+) | True | CI01000006_07699736_07726659 |
| CI01000006_07757777_07795187.mRNA | mRNA | downstream | 235483 | 7757526 ~ 7795258 (+) | True | CI01000006_07757777_07795187 |
| TU51004 | other | upstream | 133274 | 7356352 ~ 7387884 (+) | True | G44872 |
| TU50906 | other | upstream | 350624 | 7169829 ~ 7170534 (+) | True | G44782 |
| TU49812 | other | upstream | 1392483 | 6128606 ~ 6128675 (+) | True | G43873 |
| TU49806 | other | upstream | 1411570 | 6108484 ~ 6108637 (+) | True | G43869 |
| TU49835 | other | upstream | 1749383 | 5770089 ~ 5771775 (+) | True | G43896 |
| TU51341 | other | downstream | 99948 | 7621991 ~ 7683671 (+) | False | G45178 |
| TU51448 | other | downstream | 361824 | 7883867 ~ 7920355 (+) | False | G45265 |
| TU51537 | other | downstream | 497299 | 8019342 ~ 8021951 (+) | True | G45336 |
| TU51558 | other | downstream | 637473 | 8159516 ~ 8159528 (+) | False | G45351 |
| TU51555 | other | downstream | 675838 | 8197881 ~ 8199702 (+) | False | CI01000006_08198328_08199463 |
