RNA id: TU52133


Basic Information

Item Value
RNA id TU52133
length 215
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G45841
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7542588 ~ 7542802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGACCAGCACAAACAGTGAACGGCAAACACAGACTATCAATATGACCGTCAATGGGCATCCCCCTCGGATCTTAGTGTTTGGCTAATGACAAACAAGAAGGCTGTTGGACAGATGAGGTGACTGCAGGCGCCGTGTCTCAAAGCAAGTCAGTCCTGCAGGGACGTCACTGCAGTGTATGGCGGAAACGAATCCACACCCCCGCTCTGTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52124 lncRNA downstream 17415 7524866 ~ 7525173 (-) True CI01000006_07522441_07525197
TU52120 lncRNA downstream 40655 7501585 ~ 7501933 (-) True G45828
TU52095 lncRNA downstream 69612 7472582 ~ 7472976 (-) True G45811
TU51234 lncRNA downstream 137141 7405149 ~ 7405447 (-) True G45078
TU51233 lncRNA downstream 137535 7404784 ~ 7405053 (-) True G45077
TU52140 lncRNA upstream 14262 7557064 ~ 7557299 (-) True G45848
TU52141 lncRNA upstream 15300 7558102 ~ 7558322 (-) True G45849
TU52144 lncRNA upstream 20511 7563313 ~ 7563719 (-) True G45852
TU52147 lncRNA upstream 23071 7565873 ~ 7566073 (-) True G45855
TU52149 lncRNA upstream 26365 7569167 ~ 7569390 (-) True G45857
CI01000006_07522441_07525197.mRNA mRNA downstream 16775 7521049 ~ 7525813 (-) False CI01000006_07522441_07525197
CI01000006_07500281_07507754.mRNA mRNA downstream 34612 7500246 ~ 7507976 (-) False CI01000006_07500281_07507754
CI01000006_07463938_07471236.mRNA mRNA downstream 70126 7463190 ~ 7472462 (-) True CI01000006_07463938_07471236
CI01000006_07456715_07457332.mRNA mRNA downstream 85209 7456463 ~ 7457379 (-) True CI01000006_07456715_07457332
CI01000006_07449425_07454936.mRNA mRNA downstream 87282 7449425 ~ 7455306 (-) True CI01000006_07449425_07454936
CI01000006_07586562_07627355.mRNA mRNA upstream 42220 7585022 ~ 7628448 (-) True CI01000006_07586562_07627355
CI01000006_07636757_07648169.mRNA mRNA upstream 93891 7636693 ~ 7649325 (-) True CI01000006_07636757_07648169
CI01000006_07658119_07685010.mRNA mRNA upstream 114366 7657168 ~ 7686169 (-) True CI01000006_07658119_07685010
CI01000006_07731668_07752706.mRNA mRNA upstream 188858 7731660 ~ 7754105 (-) True CI01000006_07731668_07752706
CI01000006_07836338_07852081.mRNA mRNA upstream 292816 7835618 ~ 7852081 (-) True CI01000006_07836338_07852081
TU52113 other downstream 31632 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 565716 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other downstream 565716 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other downstream 565716 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736
TU49494 other downstream 2980520 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU53918 other upstream 2940054 10488238 ~ 10488435 (-) True G47397
TU54208 other upstream 3488109 11030911 ~ 11033127 (-) True G47658
TU54279 other upstream 4107561 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 4791607 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 4803390 12346192 ~ 12346649 (-) False G48451

Expression Profile