RNA id: TU51309


Basic Information

Item Value
RNA id TU51309
length 257
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G45148
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7543813 ~ 7544069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGTAAACTGTATGTTCTCAATTGATATTGTTCATTGAAGCTTATTTATTATATAGAAGAGTATTGTGAGAAAGAGATCGAGTGAGCGAGTTTATTACCTGCATTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAAAAATCTGTTTAAATGACCAATGTATTATCTTGTCCTTTTAACAGTTAAGGGGTTTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGCATCTTGTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51307 lncRNA upstream 1955 7541654 ~ 7541858 (+) True G45146
TU51297 lncRNA upstream 20183 7523397 ~ 7523630 (+) True G45136
TU51296 lncRNA upstream 21195 7522243 ~ 7522618 (+) True G45135
TU51295 lncRNA upstream 21770 7521158 ~ 7522043 (+) True G45134
TU51283 lncRNA upstream 61925 7481689 ~ 7481888 (+) True G45122
TU51312 lncRNA downstream 5730 7549799 ~ 7550010 (+) True G45151
TU51315 lncRNA downstream 10028 7554097 ~ 7554334 (+) True G45154
TU51335 lncRNA downstream 53311 7597380 ~ 7597757 (+) True G45174
TU51336 lncRNA downstream 54124 7598193 ~ 7598590 (+) True G45175
TU51293 lncRNA downstream 54767 7598836 ~ 7599365 (+) True G45132
CI01000006_07492187_07498391.mRNA mRNA upstream 45139 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07486574_07490054.mRNA mRNA upstream 53237 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07477200_07478617.mRNA mRNA upstream 65027 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07458458_07460310.mRNA mRNA upstream 83503 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07328380_07352585.mRNA mRNA upstream 190676 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07577082_07582303.mRNA mRNA downstream 32329 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07692311_07693192.mRNA mRNA downstream 148171 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07694812_07698078.mRNA mRNA downstream 150743 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07699736_07726659.mRNA mRNA downstream 155667 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07757777_07795187.mRNA mRNA downstream 213457 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
TU51004 other upstream 155929 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 373279 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1415138 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1434225 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1772038 5770089 ~ 5771775 (+) True G43896
TU51341 other downstream 77922 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 339798 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 475273 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 615447 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 653812 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463

Expression Profile