RNA id: TU51315


Basic Information

Item Value
RNA id TU51315
length 238
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G45154
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7554097 ~ 7554334 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAAGAAATTACTTTTATTCAGCAAGGATGCATTAAATTGATCAAAAGTGACAGTATAGATATTTATAATGTCGCAAAAGGTTTATATTTCAGAGATAACTTTATTTCAGAGAGACTTTCTATTCATCAAATAATCCTGAAAAAAATTGTACACAACTGTTTTCAACATTTATAATAATAATAAATGTTTCTTGAGCAGCAAATTGGCATTTTAGAATGATTTCTGTAGGATCATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51312 lncRNA upstream 4087 7549799 ~ 7550010 (+) True G45151
TU51309 lncRNA upstream 10028 7543813 ~ 7544069 (+) True G45148
TU51307 lncRNA upstream 12239 7541654 ~ 7541858 (+) True G45146
TU51297 lncRNA upstream 30467 7523397 ~ 7523630 (+) True G45136
TU51296 lncRNA upstream 31479 7522243 ~ 7522618 (+) True G45135
TU51335 lncRNA downstream 43046 7597380 ~ 7597757 (+) True G45174
TU51336 lncRNA downstream 43859 7598193 ~ 7598590 (+) True G45175
TU51293 lncRNA downstream 44502 7598836 ~ 7599365 (+) True G45132
TU51345 lncRNA downstream 49351 7603685 ~ 7604821 (+) True G45179
TU51343 lncRNA downstream 53270 7607604 ~ 7648616 (+) False G45178
CI01000006_07492187_07498391.mRNA mRNA upstream 55423 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07486574_07490054.mRNA mRNA upstream 63521 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07477200_07478617.mRNA mRNA upstream 75311 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07458458_07460310.mRNA mRNA upstream 93787 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07328380_07352585.mRNA mRNA upstream 200960 7327983 ~ 7353137 (+) True CI01000006_07328380_07352585
CI01000006_07577082_07582303.mRNA mRNA downstream 22064 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07692311_07693192.mRNA mRNA downstream 137906 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07694812_07698078.mRNA mRNA downstream 140478 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07699736_07726659.mRNA mRNA downstream 145402 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07757777_07795187.mRNA mRNA downstream 203192 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
TU51004 other upstream 166213 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 383563 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1425422 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1444509 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1782322 5770089 ~ 5771775 (+) True G43896
TU51341 other downstream 67657 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 329533 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 465008 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 605182 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 643547 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463

Expression Profile