RNA id: TU51341


Basic Information

Item Value
RNA id TU51341
length 943
RNA type TUCP
GC content 0.47
exon number 6
gene id G45178
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7607604 ~ 7683671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTATTTTGTTGTAGATCATTAAGCCGGTATGCTGCCTCAGAAGTCAGTTTCGTGAGGTACATTTGTGTGCAAATGCTGCCTGCAAAGATTTATTAAAATATAAACCAATTATTTTAAATTGTTGCACTAATTTTAATTGTTTTAAATTGGGACTTTTGCATGATAAATGCAGCCTTGGGGAACATAAGGCTTCTTTTAAAAACAACAAAAAAATCATACTGATCCCAAACATTCGTGGGGTTTAATTAAAGCAAAAACTCACATGTGAGCCTCTCTTTGAGTTCTGGGGTCGGGGCCATGTCCACTGCGCTCTTCCCGTGGCAGTTGACCAGCGTGGGGTCAGCACCATGACTCAGCAGCAGGGAACAAACTTCCACACGATTCTTGGAGGCAGCCTCGTGCAAAGGGGTGAACTGCCAGAGGTCCATGGCATTAACGCACGCCCCATGCTTCAGCAGCAGCTCTGTAACTTCATAGTGTCCATACGAACAGGCATTGTGCAGAGGAACAAGACCACCTTTATCTTTAGCGTGAACGTCAGCACCATGTTGCAGGAGAAGTTGAACTATTCGAACTCTGTTATATCCGGCTGCCAGATGCAATGGAGTGGACTTACGACCATCGCTGGCATGGCAGTTGACGTTTAACGGCGTAAGCAGGGCCATGAGCTTCTCTTCATTTCCGCTCCTCGCAGCTTCCAAGAGTTCGTCCTTCTTGTATTCACCGATGCATACATCAATTTTACCCTTAATGGCAGCTTCATGGAGGGGAGTGTAATTCCAGTTGTCTCTGGAATTGGAATCAGCTCCTTGACAAAGTAGCAAGCTGACCACCTCAGCGTGACCGAAGGAACAGGCGTTGTGCAACGGGATCAAACCTCCATCGTCTCGCGCGTGTACATTCGCCCCCGTCTGCAGGAGATGCTCCACAACGTCTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51344 lncRNA upstream 2684 7609678 ~ 7619307 (+) False G45178
TU51345 lncRNA upstream 17170 7603685 ~ 7604821 (+) True G45179
TU51293 lncRNA upstream 22626 7598836 ~ 7599365 (+) True G45132
TU51336 lncRNA upstream 23401 7598193 ~ 7598590 (+) True G45175
TU51335 lncRNA upstream 24234 7597380 ~ 7597757 (+) True G45174
TU51406 lncRNA downstream 2287 7685958 ~ 7686176 (+) True G45233
TU51371 lncRNA downstream 51138 7734809 ~ 7743460 (+) False G45201
TU51373 lncRNA downstream 51138 7734809 ~ 7743460 (+) False G45201
TU51374 lncRNA downstream 58880 7742551 ~ 7748959 (+) True G45201
TU51420 lncRNA downstream 135442 7819113 ~ 7819734 (+) True G45244
CI01000006_07577082_07582303.mRNA mRNA upstream 39678 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07492187_07498391.mRNA mRNA upstream 123317 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07486574_07490054.mRNA mRNA upstream 131415 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07477200_07478617.mRNA mRNA upstream 143205 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07458458_07460310.mRNA mRNA upstream 161681 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07692311_07693192.mRNA mRNA downstream 8569 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07694812_07698078.mRNA mRNA downstream 11141 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07699736_07726659.mRNA mRNA downstream 16065 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07757777_07795187.mRNA mRNA downstream 73855 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07939608_07940846.mRNA mRNA downstream 255647 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
TU51004 other upstream 234107 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 451457 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1493316 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1512403 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1850216 5770089 ~ 5771775 (+) True G43896
TU51448 other downstream 200196 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 335671 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 475845 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 514210 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other downstream 515173 8198844 ~ 8198909 (+) False G45351

Expression Profile