RNA id: TU52187


Basic Information

Item Value
RNA id TU52187
length 544
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G45884
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7728393 ~ 7728936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCACAATTTTGTGTTGTTCATCAAATCTCACCAACAGGTCAAACCCTGATAGCACACAAACATCCCAGAGACATCTGTTTGATATCTGCATTTACATCTTTATTCTACATTTACATTTACATCATTTTTAGTTTTTGCTCATCTGCAATACGTCTATAGGACGTCTCCTGTCAGATGTCATATAGACATTTAGAAGATGTCTTTAAGATGTTTATGGTTTAGAATGTATGTAAAACTGCTCTTTCTAAGACATTTATCAGATGTATTTACTCAGCAGATGTTTTCCAAATCTCTAGATCTTTAACAGACATCTTACAGATATACCTGTGCTATCTGGGAACAGATGTTCACTTGCTTTTAAATGTGCCTAGATTCATACCTTCATGTTGTTTGGTTCACTGTGTTAATGTATTACACACTTAAGTGAGTGTCTAGGTGTCACCAGGCAATCAGGTGATAGTCTGTCAAACAAAGGTATCGATCGTCTTCTGTCAATGGGGACTGTGTTGTCGGTTTAATTAAAATGCGCAGGTAATAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52179 lncRNA downstream 16213 7709119 ~ 7712180 (-) False G45877
TU52178 lncRNA downstream 16213 7710502 ~ 7712180 (-) True G45877
TU52157 lncRNA downstream 39251 7688754 ~ 7689142 (-) True G45865
TU52102 lncRNA downstream 144711 7576909 ~ 7583682 (-) True G45813
TU52149 lncRNA downstream 159003 7569167 ~ 7569390 (-) True G45857
TU52166 lncRNA upstream 26178 7755114 ~ 7761173 (-) False G45870
TU52167 lncRNA upstream 28765 7757701 ~ 7761173 (-) True G45870
TU52164 lncRNA upstream 63034 7791970 ~ 7796624 (-) True G45868
TU52205 lncRNA upstream 70933 7799869 ~ 7800121 (-) True G45902
TU52206 lncRNA upstream 73598 7802534 ~ 7802749 (-) True G45903
CI01000006_07658119_07685010.mRNA mRNA downstream 42224 7657168 ~ 7686169 (-) True CI01000006_07658119_07685010
CI01000006_07636757_07648169.mRNA mRNA downstream 79068 7636693 ~ 7649325 (-) True CI01000006_07636757_07648169
CI01000006_07586562_07627355.mRNA mRNA downstream 99945 7585022 ~ 7628448 (-) True CI01000006_07586562_07627355
CI01000006_07522441_07525197.mRNA mRNA downstream 202580 7521049 ~ 7525813 (-) False CI01000006_07522441_07525197
CI01000006_07500281_07507754.mRNA mRNA downstream 220417 7500246 ~ 7507976 (-) False CI01000006_07500281_07507754
CI01000006_07731668_07752706.mRNA mRNA upstream 2724 7731660 ~ 7754105 (-) True CI01000006_07731668_07752706
CI01000006_07836338_07852081.mRNA mRNA upstream 106682 7835618 ~ 7852081 (-) True CI01000006_07836338_07852081
CI01000006_07879567_07902271.mRNA mRNA upstream 150592 7879528 ~ 7902271 (-) True CI01000006_07879567_07902271
CI01000006_07929484_07931926.mRNA mRNA upstream 200281 7929217 ~ 7931926 (-) True CI01000006_07929484_07931926
CI01000006_07942201_07958652.mRNA mRNA upstream 213241 7942177 ~ 7958652 (-) True CI01000006_07942201_07958652
TU52113 other downstream 217437 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 751521 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other downstream 751521 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other downstream 751521 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736
TU49494 other downstream 3166325 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU53918 other upstream 2753920 10488238 ~ 10488435 (-) True G47397
TU54208 other upstream 3301975 11030911 ~ 11033127 (-) True G47658
TU54279 other upstream 3921427 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 4605473 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 4617256 12346192 ~ 12346649 (-) False G48451

Expression Profile