RNA id: TU51497


Basic Information

Item Value
RNA id TU51497
length 204
lncRNA type intronic
GC content 0.35
exon number 1
gene id G45303
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7955046 ~ 7955249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTCTTGTGGATGTTCTCCACACAAGACTGAAAGCACACGTGTCTCTAGTAGCCTGACTAATATGTTGTTTTCCTTTTTTTTTTTTTGAAGAGATTTGTACTGTTATCTAAGATGGCTTTTTCTTTTTCAGTTCTTGGAAGTTCATGTGTGACAGTGATGAAACGCACAGAAACAAATTCCTCCAAAGATATCAAGATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51491 lncRNA upstream 8071 7946257 ~ 7946975 (+) True G45297
TU51447 lncRNA upstream 34691 7919035 ~ 7920355 (+) True G45265
TU51444 lncRNA upstream 67931 7885652 ~ 7887115 (+) False G45265
TU51425 lncRNA upstream 123639 7831162 ~ 7831407 (+) True G45249
TU51420 lncRNA upstream 135312 7819113 ~ 7819734 (+) True G45244
TU51503 lncRNA downstream 15783 7971032 ~ 7971805 (+) True G45308
TU51517 lncRNA downstream 37384 7992633 ~ 7992865 (+) True G45322
TU51522 lncRNA downstream 38603 7993852 ~ 7994217 (+) True G45325
TU51511 lncRNA downstream 49062 8004311 ~ 8005552 (+) True G45316
TU51508 lncRNA downstream 52473 8007722 ~ 8008279 (+) True G45313
CI01000006_07939608_07940846.mRNA mRNA upstream 13631 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
CI01000006_07757777_07795187.mRNA mRNA upstream 159788 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07699736_07726659.mRNA mRNA upstream 228049 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07694812_07698078.mRNA mRNA upstream 256612 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07692311_07693192.mRNA mRNA upstream 260929 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_08025159_08032131.mRNA mRNA downstream 69910 8025159 ~ 8032623 (+) True CI01000006_08025159_08032131
CI01000006_08108713_08122179.mRNA mRNA downstream 153314 8108563 ~ 8122364 (+) True CI01000006_08108713_08122179
CI01000006_08184916_08188512.mRNA mRNA downstream 229550 8184799 ~ 8189299 (+) True CI01000006_08184916_08188512
CI01000006_08198328_08199463.mRNA mRNA downstream 242948 8198197 ~ 8199666 (+) False CI01000006_08198328_08199463
CI01000006_08222787_08225568.mRNA mRNA downstream 267538 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
TU51448 other upstream 34691 7883867 ~ 7920355 (+) False G45265
TU51341 other upstream 271375 7621991 ~ 7683671 (+) False G45178
TU51004 other upstream 567162 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 784512 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1826371 6128606 ~ 6128675 (+) True G43873
TU51537 other downstream 64093 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 204267 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 242632 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other downstream 243595 8198844 ~ 8198909 (+) False G45351
TU51557 other downstream 243595 8198844 ~ 8198909 (+) True G45351

Expression Profile