RNA id: TU51511


Basic Information

Item Value
RNA id TU51511
length 183
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G45316
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8004311 ~ 8005552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATCCACTAAATGGTACGTGCCGGAACCAATTAACACCTGTCTGATAACAACATCCACACCAAGCTTAGCAGCAAGTCCCAGTTTGTCCAGCCACATAAAACCAGCTACAAATGTGTCTGATAGACCAATGGCGCCTCCACCATATGCCGAGCTCGTCTCTCCCAGCCAAACCTTCTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51522 lncRNA upstream 10094 7993852 ~ 7994217 (+) True G45325
TU51517 lncRNA upstream 11446 7992633 ~ 7992865 (+) True G45322
TU51503 lncRNA upstream 32506 7971032 ~ 7971805 (+) True G45308
TU51497 lncRNA upstream 49062 7955046 ~ 7955249 (+) True G45303
TU51491 lncRNA upstream 57336 7946257 ~ 7946975 (+) True G45297
TU51508 lncRNA downstream 2170 8007722 ~ 8008279 (+) True G45313
TU51547 lncRNA downstream 63480 8069032 ~ 8069244 (+) True G45346
TU51588 lncRNA downstream 127655 8133207 ~ 8146080 (+) True G45381
TU51563 lncRNA downstream 149244 8154796 ~ 8157535 (+) True G45356
TU51600 lncRNA downstream 153084 8158636 ~ 8158893 (+) True G45391
CI01000006_07939608_07940846.mRNA mRNA upstream 62896 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
CI01000006_07757777_07795187.mRNA mRNA upstream 209053 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07699736_07726659.mRNA mRNA upstream 277314 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07694812_07698078.mRNA mRNA upstream 305877 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07692311_07693192.mRNA mRNA upstream 310194 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_08025159_08032131.mRNA mRNA downstream 19607 8025159 ~ 8032623 (+) True CI01000006_08025159_08032131
CI01000006_08108713_08122179.mRNA mRNA downstream 103011 8108563 ~ 8122364 (+) True CI01000006_08108713_08122179
CI01000006_08184916_08188512.mRNA mRNA downstream 179247 8184799 ~ 8189299 (+) True CI01000006_08184916_08188512
CI01000006_08198328_08199463.mRNA mRNA downstream 192645 8198197 ~ 8199666 (+) False CI01000006_08198328_08199463
CI01000006_08222787_08225568.mRNA mRNA downstream 217235 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
TU51448 other upstream 83956 7883867 ~ 7920355 (+) False G45265
TU51341 other upstream 320640 7621991 ~ 7683671 (+) False G45178
TU51004 other upstream 616427 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 833777 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1875636 6128606 ~ 6128675 (+) True G43873
TU51537 other downstream 13790 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 153964 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 192329 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other downstream 193292 8198844 ~ 8198909 (+) False G45351
TU51557 other downstream 193292 8198844 ~ 8198909 (+) True G45351

Expression Profile