RNA id: TU51884


Basic Information

Item Value
RNA id TU51884
length 255
lncRNA type inter_gene
GC content 0.24
exon number 2
gene id G45630
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8705333 ~ 8705667 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGCATTATATGTAGCTAGTGTTATGTTGTAATGTTTAATATTTGAAACAATCCAATAAATTCATTAAACATCTTACATTTGGGAATTTAAGACAGGTTGGAGGTTATCCTAACTTATAACTAAAAGTTATTTACGATGATTTTTAAGAAAATTCTTTTTGGGAATATGAATACTTCTTGAATTTTTATCTTAAGAACAATCTTAAGAAGAAATTGGCAGATAAGAATTTTATTCTTAAGAATGTTTTGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51780 lncRNA upstream 130589 8572694 ~ 8574744 (+) True G45528
TU51658 lncRNA upstream 371855 8332579 ~ 8333478 (+) True G45438
TU51566 lncRNA upstream 466927 8234738 ~ 8238406 (+) True G45359
TU51601 lncRNA upstream 545866 8159245 ~ 8159467 (+) True G45392
TU51600 lncRNA upstream 546440 8158636 ~ 8158893 (+) True G45391
TU51628 lncRNA downstream 44244 8749911 ~ 8750496 (+) True G45413
TU51994 lncRNA downstream 218163 8923830 ~ 8924046 (+) True G45734
TU52008 lncRNA downstream 249632 8955299 ~ 8955505 (+) True G45748
TU52027 lncRNA downstream 291415 8997082 ~ 8997321 (+) True G45765
TU52031 lncRNA downstream 324693 9030360 ~ 9037570 (+) True G45769
CI01000006_08673737_08674685.mRNA mRNA upstream 30219 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
CI01000006_08528828_08531392.mRNA mRNA upstream 173876 8528828 ~ 8531457 (+) True CI01000006_08528828_08531392
CI01000006_08366730_08400944.mRNA mRNA upstream 303008 8366090 ~ 8402325 (+) True CI01000006_08366730_08400944
CI01000006_08305571_08341681.mRNA mRNA upstream 363652 8305571 ~ 8341681 (+) True CI01000006_08305571_08341681
CI01000006_08222787_08225568.mRNA mRNA upstream 479765 8222787 ~ 8225568 (+) True CI01000006_08222787_08225568
CI01000006_08757702_08765273.mRNA mRNA downstream 51752 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_08847431_08853895.mRNA mRNA downstream 140593 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_09004949_09014310.mRNA mRNA downstream 299007 9004674 ~ 9014589 (+) True CI01000006_09004949_09014310
CI01000006_09066050_09070383.mRNA mRNA downstream 360295 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
CI01000006_09098943_09103197.mRNA mRNA downstream 393015 9098682 ~ 9104172 (+) True CI01000006_09098943_09103197
TU51562 other upstream 492945 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 505188 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 505631 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU51552 other upstream 505631 8198844 ~ 8198909 (+) False G45351
TU51558 other upstream 506541 8159516 ~ 8159528 (+) False G45351
TU51632 other downstream 113147 8818814 ~ 8834697 (+) True G45416
TU53040 other downstream 1450912 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1779691 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2710562 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2710562 11416229 ~ 11521703 (+) True G47159

Expression Profile