RNA id: TU52031


Basic Information

Item Value
RNA id TU52031
length 317
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G45769
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9030360 ~ 9037570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTCTTTAGCGTCTGAGAAATGATGTGATAGAGTCAGTCAGTCTCCCTACGTTTTCAAAGTACTTAGCCTACATGTTTGTTTATATATCCACATTTTGCAATTAACGTAAAATATATTGTTTCTATCTACATAATCACCAGATTTATATTTATCCATCGTTTGTCAACAATAATCCATCGTGATTATCGGGGAATCAGGAATATTATTCAGGCCCATGATGTTGATGTACACAAACCCTGGTTGCATCATTACACTTTACGTGTTCTGCAACAGTGAATAGGCCTATACGCAGATGGAAAAACAGCATTCAAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52027 lncRNA upstream 33039 8997082 ~ 8997321 (+) True G45765
TU52008 lncRNA upstream 74855 8955299 ~ 8955505 (+) True G45748
TU51994 lncRNA upstream 106314 8923830 ~ 8924046 (+) True G45734
TU51628 lncRNA upstream 279864 8749911 ~ 8750496 (+) True G45413
TU51796 lncRNA upstream 290762 8682981 ~ 8739598 (+) True G45543
TU52041 lncRNA downstream 3397 9040967 ~ 9041168 (+) True G45778
TU52054 lncRNA downstream 16414 9053984 ~ 9054296 (+) True G45787
TU52073 lncRNA downstream 40871 9078441 ~ 9078662 (+) True G45796
TU52594 lncRNA downstream 52456 9090026 ~ 9090232 (+) True G46246
TU52596 lncRNA downstream 53681 9091251 ~ 9091459 (+) True G46248
CI01000006_09004949_09014310.mRNA mRNA upstream 15771 9004674 ~ 9014589 (+) True CI01000006_09004949_09014310
CI01000006_08847431_08853895.mRNA mRNA upstream 176439 8846260 ~ 8853921 (+) True CI01000006_08847431_08853895
CI01000006_08757702_08765273.mRNA mRNA upstream 264298 8757419 ~ 8766062 (+) True CI01000006_08757702_08765273
CI01000006_08673737_08674685.mRNA mRNA upstream 355246 8673580 ~ 8675114 (+) True CI01000006_08673737_08674685
CI01000006_08528828_08531392.mRNA mRNA upstream 498903 8528828 ~ 8531457 (+) True CI01000006_08528828_08531392
CI01000006_09066050_09070383.mRNA mRNA downstream 28392 9065962 ~ 9070581 (+) True CI01000006_09066050_09070383
CI01000006_09098943_09103197.mRNA mRNA downstream 61112 9098682 ~ 9104172 (+) True CI01000006_09098943_09103197
CI01000006_09105004_09106470.mRNA mRNA downstream 66645 9104215 ~ 9106963 (+) True CI01000006_09105004_09106470
CI01000006_09107491_09114820.mRNA mRNA downstream 69256 9106826 ~ 9115071 (+) True CI01000006_09107491_09114820
CI01000006_09192219_09195918.mRNA mRNA downstream 154327 9191897 ~ 9195984 (+) True CI01000006_09192219_09195918
TU51632 other upstream 195663 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 817972 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 830215 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 830658 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 1119009 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 1447788 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 2378659 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 2378659 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 2586697 11624267 ~ 11638252 (+) True G47318

Expression Profile