RNA id: TU54074


Basic Information

Item Value
RNA id TU54074
length 1028
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G47545
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10784866 ~ 10785977 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCAAAAATAAATTCATTTATTAAATATGTTGTTGTGCAATCCATTTCTGTTCATTTGCACTAAACAATTTAAATGCAAGTGATACAAGAAGATTTTGATTCTTAATCATCAGGCTTGAAAATGAAAAAAGAAAGTGGTGATGATGCTGTTAATAACATTCTCAGGATGTCGTTATGTAATAATGTTCTAGTCAAGAAAGTTATTGCATATCCTAATGGCATCTTCTAATAAAAATGCTGACAAACGGATGTGAAGTGGATCATCAAGTTTATCAAGCAAGGTTTACAACCTCCGGGTCAGGTTTGAGGGTCCAAATTTATAGTATGTTGCTTTAGAAATCATTAAATCACAAGATTCATTTTATATGTTGTAGTTAAGCACAGTAATTTCCCTTAAGGAGAATTTTGCCTTACTTTGATATAGCAGGTTGTATCCCAACAGTTTAAATACATGACAAAAAAGTGGTTCTGGGAATTTATAGGAGCACTTTATTATCATTTTTTAGGATGTCATTGTTGCACTATATAACTTTTTATGGTTTGAATGAAGTACTTAAGCTTTCCCACTAACCTGTTCCGTGCTTTATTTCATCATTTCCTATAATTGCCATTTAAAGACCGATGGTCATAAATGTAAGTGCATTCTTCTCTCTTTGTTACCATGTGTTAATGTACACATGAAGTTAAAAACCAATCAAAAATAATGAGGATGACCTCTCCTCTAGTTTCAGAGTAAACATTTTTTACCCATCCATATCAGAAACATACTAGGAGTTCTGTTCTTTCTCAGCCTTGGCACATCAGGAGTCCTAGAATATTGAGTCCTCCTACTGAGCTGCCATATTGCCCATGTAACCCACTCAATACCCTTCATCTGCCCAGGTCACCTCATAGTCTGGGTAATGGGTTTTTATCTTCTCTGTGGAAACAGAATGCTTTGCTCTCCCGAATCCATAGAATAACCGTAGACGTGGATCTTCTTTGCGTCTCTGTCATGTTTGATTCTTCCACCTCCGAGACACTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54100 lncRNA downstream 7192 10776818 ~ 10777674 (-) True G47568
TU54087 lncRNA downstream 27324 10753158 ~ 10757542 (-) True G47558
TU54073 lncRNA downstream 52635 10731445 ~ 10732231 (-) True G47544
TU54048 lncRNA downstream 77322 10661015 ~ 10707544 (-) True G47520
TU53971 lncRNA downstream 264515 10518183 ~ 10520351 (-) True G47444
TU54121 lncRNA upstream 42923 10828900 ~ 10830837 (-) True G47580
TU54130 lncRNA upstream 51082 10837059 ~ 10873768 (-) False G47583
TU54131 lncRNA upstream 76092 10862069 ~ 10913239 (-) True G47584
TU54128 lncRNA upstream 84801 10870778 ~ 10873768 (-) True G47583
TU54149 lncRNA upstream 118875 10904852 ~ 10905287 (-) True G47601
CI01000006_10676705_10699710.mRNA mRNA downstream 84984 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 275211 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_10453630_10483241.mRNA mRNA downstream 300860 10453613 ~ 10484006 (-) False CI01000006_10453630_10483241
CI01000006_10402704_10447782.mRNA mRNA downstream 335765 10402695 ~ 10449101 (-) True CI01000006_10402704_10447782
CI01000006_10372387_10387314.mRNA mRNA downstream 397264 10372129 ~ 10387602 (-) True CI01000006_10372387_10387314
CI01000006_11320839_11338355.mRNA mRNA upstream 534485 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_11388077_11391485.mRNA mRNA upstream 601517 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11459706_11462546.mRNA mRNA upstream 673311 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11530728_11535297.mRNA mRNA upstream 744389 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 809662 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
TU53918 other downstream 296431 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3273910 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 3807994 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54208 other upstream 244934 11030911 ~ 11033127 (-) True G47658
TU54279 other upstream 864386 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 1548432 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 1560215 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 1560282 12346259 ~ 12346649 (-) True G48451

Expression Profile