Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU54121 |
| length | 772 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 4 |
| gene id | G47580 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 10828900 ~ 10830837 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU54074 | lncRNA | downstream | 42923 | 10784866 ~ 10785977 (-) | True | G47545 |
| TU54100 | lncRNA | downstream | 51226 | 10776818 ~ 10777674 (-) | True | G47568 |
| TU54087 | lncRNA | downstream | 71358 | 10753158 ~ 10757542 (-) | True | G47558 |
| TU54073 | lncRNA | downstream | 96669 | 10731445 ~ 10732231 (-) | True | G47544 |
| TU54048 | lncRNA | downstream | 121356 | 10661015 ~ 10707544 (-) | True | G47520 |
| TU54130 | lncRNA | upstream | 6222 | 10837059 ~ 10873768 (-) | False | G47583 |
| TU54131 | lncRNA | upstream | 31232 | 10862069 ~ 10913239 (-) | True | G47584 |
| TU54128 | lncRNA | upstream | 39941 | 10870778 ~ 10873768 (-) | True | G47583 |
| TU54149 | lncRNA | upstream | 74015 | 10904852 ~ 10905287 (-) | True | G47601 |
| TU54166 | lncRNA | upstream | 82974 | 10913811 ~ 10914098 (-) | True | G47618 |
| CI01000006_10676705_10699710.mRNA | mRNA | downstream | 129018 | 10676367 ~ 10699882 (-) | True | CI01000006_10676705_10699710 |
| CI01000006_10499329_10508831.mRNA | mRNA | downstream | 319245 | 10499295 ~ 10509655 (-) | False | CI01000006_10499329_10508831 |
| CI01000006_10453630_10483241.mRNA | mRNA | downstream | 344894 | 10453613 ~ 10484006 (-) | False | CI01000006_10453630_10483241 |
| CI01000006_10402704_10447782.mRNA | mRNA | downstream | 379799 | 10402695 ~ 10449101 (-) | True | CI01000006_10402704_10447782 |
| CI01000006_10372387_10387314.mRNA | mRNA | downstream | 441298 | 10372129 ~ 10387602 (-) | True | CI01000006_10372387_10387314 |
| CI01000006_11320839_11338355.mRNA | mRNA | upstream | 489625 | 11320462 ~ 11338355 (-) | True | CI01000006_11320839_11338355 |
| CI01000006_11388077_11391485.mRNA | mRNA | upstream | 556657 | 11387494 ~ 11391485 (-) | True | CI01000006_11388077_11391485 |
| CI01000006_11459706_11462546.mRNA | mRNA | upstream | 628451 | 11459288 ~ 11462605 (-) | True | CI01000006_11459706_11462546 |
| CI01000006_11530728_11535297.mRNA | mRNA | upstream | 699529 | 11530366 ~ 11535900 (-) | True | CI01000006_11530728_11535297 |
| CI01000006_11596063_11609407.mRNA | mRNA | upstream | 764802 | 11595639 ~ 11609407 (-) | True | CI01000006_11596063_11609407 |
| TU53918 | other | downstream | 340465 | 10488238 ~ 10488435 (-) | True | G47397 |
| TU52113 | other | downstream | 3317944 | 7510829 ~ 7510956 (-) | True | G45821 |
| TU51020 | other | downstream | 3852028 | 6973224 ~ 6976872 (-) | False | CI01000006_06974359_06976736 |
| TU54208 | other | upstream | 200074 | 11030911 ~ 11033127 (-) | True | G47658 |
| TU54279 | other | upstream | 819526 | 11650363 ~ 11654407 (-) | True | CI01000006_11651067_11653761 |
| TU55106 | other | upstream | 1503572 | 12334409 ~ 12346649 (-) | True | G48451 |
| TU55104 | other | upstream | 1515355 | 12346192 ~ 12346649 (-) | False | G48451 |
| TU55105 | other | upstream | 1515422 | 12346259 ~ 12346649 (-) | True | G48451 |
