RNA id: TU54231


Basic Information

Item Value
RNA id TU54231
length 327
lncRNA type inter_gene
GC content 0.34
exon number 6
gene id G47681
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11111614 ~ 11115511 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCTCTCCTTTCTCTCCAGGTGAGCCTGATTCACCCTTATAGCCTAGAGGACCCTTCGGTCCTGGAATCCCTGGAGACCCATGAGGCCCGTCCAGTCCGTTTTCCCCATCCTTTCCATAGACTCCTGCTCTTCCAACCACACCTTTTGGTCCACGGTCACCCATGTCTCCCATACGTCCTGGACGTCCTCGTTCACCTGGCTCCCCAGGTGGCCCCTGTGGCCCAGGTTTCCCCATCTCTCCTTCCGGACCAGGCAGACCTTGCGCTCTAGGCCAGCCTGCACGGAGAAGCTGGAAGAACGATGTTTGCTGAAACGCAGCCCATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54223 lncRNA downstream 42566 11063673 ~ 11069048 (-) True G47673
TU54218 lncRNA downstream 56033 11054903 ~ 11055581 (-) True G47668
TU54203 lncRNA downstream 92405 11017763 ~ 11019209 (-) True G47654
TU54186 lncRNA downstream 122811 10974694 ~ 10988803 (-) True G47638
TU54170 lncRNA downstream 186004 10917556 ~ 10925610 (-) True G47622
TU54350 lncRNA upstream 172124 11287635 ~ 11290951 (-) False G47758
TU54351 lncRNA upstream 176001 11291512 ~ 11292481 (-) True G47758
TU54403 lncRNA upstream 363595 11479106 ~ 11480792 (-) False G47806
TU54408 lncRNA upstream 363595 11479106 ~ 11482501 (-) True G47806
TU54414 lncRNA upstream 388067 11503578 ~ 11504962 (-) True G47812
CI01000006_10676705_10699710.mRNA mRNA downstream 411732 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 601959 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_10453630_10483241.mRNA mRNA downstream 627608 10453613 ~ 10484006 (-) False CI01000006_10453630_10483241
CI01000006_10402704_10447782.mRNA mRNA downstream 662513 10402695 ~ 10449101 (-) True CI01000006_10402704_10447782
CI01000006_10372387_10387314.mRNA mRNA downstream 724012 10372129 ~ 10387602 (-) True CI01000006_10372387_10387314
CI01000006_11320839_11338355.mRNA mRNA upstream 204951 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_11388077_11391485.mRNA mRNA upstream 271983 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11459706_11462546.mRNA mRNA upstream 343777 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11530728_11535297.mRNA mRNA upstream 414855 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 480128 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
TU54208 other downstream 78487 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 623179 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3600658 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4134742 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 534852 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 1218898 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 1230681 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 1230748 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 1235248 12350759 ~ 12529810 (-) False G48450

Expression Profile