Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU53676 |
| length | 2791 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G47184 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 11287486 ~ 11290495 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53686 | lncRNA | upstream | 102316 | 11104661 ~ 11185170 (+) | True | G47194 |
| TU53748 | lncRNA | upstream | 461553 | 10825660 ~ 10825933 (+) | True | G47252 |
| TU53667 | lncRNA | upstream | 482433 | 10801586 ~ 10805053 (+) | True | G47175 |
| TU53705 | lncRNA | upstream | 614894 | 10664966 ~ 10672592 (+) | True | G47213 |
| TU53712 | lncRNA | upstream | 671468 | 10615325 ~ 10616018 (+) | True | G47220 |
| TU53653 | lncRNA | downstream | 24028 | 11314523 ~ 11321670 (+) | True | G47164 |
| TU53650 | lncRNA | downstream | 96708 | 11387203 ~ 11392950 (+) | True | G47163 |
| TU53799 | lncRNA | downstream | 124261 | 11414756 ~ 11415179 (+) | True | G47298 |
| TU53800 | lncRNA | downstream | 124943 | 11415438 ~ 11415704 (+) | True | G47299 |
| TU53678 | lncRNA | downstream | 141304 | 11432913 ~ 11435849 (+) | True | G47186 |
| CI01000006_11178091_11284993.mRNA | mRNA | upstream | 2455 | 11177136 ~ 11285031 (+) | True | CI01000006_11178091_11284993 |
| CI01000006_11143743_11157316.mRNA | mRNA | upstream | 128899 | 11143743 ~ 11158587 (+) | True | CI01000006_11143743_11157316 |
| CI01000006_11122190_11137711.mRNA | mRNA | upstream | 149730 | 11122190 ~ 11137756 (+) | True | CI01000006_11122190_11137711 |
| CI01000006_11069210_11101466.mRNA | mRNA | upstream | 185997 | 11068275 ~ 11101489 (+) | True | CI01000006_11069210_11101466 |
| CI01000006_10921053_11064211.mRNA | mRNA | upstream | 223275 | 10921053 ~ 11064211 (+) | True | CI01000006_10921053_11064211 |
| CI01000006_11298514_11313005.mRNA | mRNA | downstream | 7877 | 11298372 ~ 11313385 (+) | True | CI01000006_11298514_11313005 |
| CI01000006_11362605_11384441.mRNA | mRNA | downstream | 72110 | 11362605 ~ 11385087 (+) | True | CI01000006_11362605_11384441 |
| CI01000006_11395393_11412606.mRNA | mRNA | downstream | 104628 | 11395123 ~ 11412606 (+) | True | CI01000006_11395393_11412606 |
| CI01000006_11429439_11432136.mRNA | mRNA | downstream | 138279 | 11428774 ~ 11432246 (+) | False | CI01000006_11429439_11432136 |
| CI01000006_11436920_11440304.mRNA | mRNA | downstream | 146425 | 11436920 ~ 11440304 (+) | False | CI01000006_11436920_11440304 |
| TU53607 | other | upstream | 775680 | 10485358 ~ 10511806 (+) | True | G47145 |
| TU53040 | other | upstream | 1128235 | 10156579 ~ 10159251 (+) | False | G46652 |
| TU51632 | other | upstream | 2452789 | 8818814 ~ 8834697 (+) | True | G45416 |
| TU51562 | other | upstream | 3075098 | 8209555 ~ 8212388 (+) | True | G45355 |
| TU51557 | other | upstream | 3087341 | 8198844 ~ 8198909 (+) | True | G45351 |
| TU53635 | other | downstream | 125734 | 11416229 ~ 11416560 (+) | False | G47159 |
| TU53639 | other | downstream | 125734 | 11416229 ~ 11521703 (+) | True | G47159 |
| TU53826 | other | downstream | 333772 | 11624267 ~ 11638252 (+) | True | G47318 |
| TU54708 | other | downstream | 987125 | 12277620 ~ 12279541 (+) | True | G48094 |
| TU54695 | other | downstream | 1086511 | 12377006 ~ 12384827 (+) | True | G48081 |
