RNA id: TU54408


Basic Information

Item Value
RNA id TU54408
length 691
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G47806
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11479106 ~ 11482501 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCCTGCCCGCACTGAGGGGAGAGGAGAGCTATGTGTGTGTAAGGTTGTGCTGTGACATGCAGTGATGGCTGATGGGAGATTTTCACCCAGAGGGTGTTAAAGTCGGTGTCCTTTAAATGAAAGCCGAGGTCTTATGATCCATGTTATTCAATCTAGCTGAGTTTTACGGCTCCAACGCAGGAGTGATTATGCCGATGGAGGTTAACGTAGCATGAAATAACACTGAGAGTGTGTGTGTGAGTAAGCACATATTTTAGAAGTGATAGAAAGTGTGTGTAATCTTAAAAGTAATAATGCTGAGATGTACGTGTGTACTTCCTCTCAAACCTGATTGAAAAGCTCGGTCGTCAGTCCTAGGTAGTTGTGAAGTGCCAGGAAAGTGACTCTCTGCAGGCGCACCATGATTATCTGTATGACTCTCACTAGTGTCTCTGGGTATTTCTCAAACACTGACTGGAAAGCTGAGGCAGGCAAACGCAATATGGTAGACCTGACCGCTGCACGAGCAGACACGGTCTTATAAGGAGCAGGATAACCTGTAATGATGTCTAGAATGCTGAGAAGACTGTGAACGCTGTCCCCGGGCAACACGTCCTTCACCACAGGCTCTGTGCCATCAAACTCATGAATGCAAAGCTCAAGCCTTCCATCCTGAACCACATAAATGCTGTCATCATCATCCCCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54351 lncRNA downstream 186625 11291512 ~ 11292481 (-) True G47758
TU54350 lncRNA downstream 188155 11287635 ~ 11290951 (-) False G47758
TU54231 lncRNA downstream 363595 11111614 ~ 11115511 (-) True G47681
TU54223 lncRNA downstream 410058 11063673 ~ 11069048 (-) True G47673
TU54218 lncRNA downstream 423525 11054903 ~ 11055581 (-) True G47668
TU54414 lncRNA upstream 21077 11503578 ~ 11504962 (-) True G47812
TU54456 lncRNA upstream 157928 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA upstream 157928 11640429 ~ 11641264 (-) True G47853
TU54458 lncRNA upstream 163026 11645527 ~ 11648165 (-) True G47854
TU54287 lncRNA upstream 222426 11704927 ~ 11708257 (-) True G47705
CI01000006_11459706_11462546.mRNA mRNA downstream 16501 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11388077_11391485.mRNA mRNA downstream 87621 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11320839_11338355.mRNA mRNA downstream 140751 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_10676705_10699710.mRNA mRNA downstream 779224 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 969451 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_11530728_11535297.mRNA mRNA upstream 47865 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 113138 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11627878_11631177.mRNA mRNA upstream 144693 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11636228_11638176.mRNA mRNA upstream 153727 11636228 ~ 11638176 (-) True CI01000006_11636228_11638176
CI01000006_11651067_11653761.mRNA mRNA upstream 168412 11650913 ~ 11654424 (-) False CI01000006_11651067_11653761
TU54208 other downstream 445979 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 990671 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3968150 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4502234 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 167862 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 851908 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 863691 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 863758 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 868258 12350759 ~ 12529810 (-) False G48450

Expression Profile