RNA id: TU54458


Basic Information

Item Value
RNA id TU54458
length 2151
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G47854
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11645527 ~ 11648165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAGTTTCAATATAAGCACGAGAATATGAGCTGCACATTTCTGCTTTTTAAACCATGCCGAATATTTTAAACTGAGTAAAGAAACAAAATCATCTGTGGTGATCGACAGCATGTCACAGATGTCCTCCTGAGAAGTTCGTATTTACGAGGTGGGAAGTGGTGTTTACGACGTCAGGTGCGTTCAAGTCATTTTTGTCAGAGTAAGATGGTGGTGTACCTTCTACTACACAAAAATACAGCAAGGTTTTAACTCTATACTTCTAGAAAATGAAGAACAAAGAATGTGCATCAGGTGTGCTTTGCTTTTTTTATGTTTTTAATTAATTTATGAAGCAACTGTAAACTTTACCGTTACATATTATATTGTTATATTAGAACGTTATCATATTTTATGAACCTTTGAAAATGTCAGAGATTTTGGAATAATGCAACAATTCTAACCCCATATATGTATCTCACTGACACGCCCAAACTCGTAAACTCTGGGCTTAAAGAAATTTCCAAGCTTCCTACGAGTTAAACTCGTAAATACAATCTTTCCAACATGTCTTGAACGCACCATTTATTCATTTTGAACCCAGAACTTGTGTTTAAAGTGTTAGGTATAACATGATAGTTTAACGTTAAATCACACTTTGAAAAAATCTGTGAAATTTACGGTAAAAAAAAAACAAAAAACAGATGTATTACAATGAAAAACCATCAAATGTGTCACAAAAGTGTCACACAGGGTCAATTTACAGTTTTCAGTGAAGATTTTAAGATGGCTTGTTCATTTTCACTTCCAAAAACTCTTTCCAAAAAAGATTTATTACAGTTTTTTCAACTATAGTAAAGGTAACTTACTGTTAAACCGGTTTTACTATAAAAATGACAAAAAAAAATTTACACTTAGATTATTCCTGATTATTCTCTTGTCATCCTTGCTCTTGACCACAGATTAGTACTTTATTTTTCCCTGTTAAAGCGAACGTTTCAAAGAATGCTAGGCTGCAGATTGTCCCATACGGTCAATCCTCTGACCCTTTTCCCTGTGGACGCCCCGTGTATCTCACCATAATAACGACAACCAGGGAGTGGAAAGTGTGTGTTAAACTCAGAGTCATCTGGTGTAAGGCTGCATCTGTTTGTTTCTAGGGTAAGATTGGTTTCTTCCGGGAGGTCATCTTGGGTAAGGGCTTGATTAAAAAACGGTGGATCTTTTTATGCGTTTGATGTTGTACTTTGTAGAAGCCCTTTAATGTAGACCCCGTTTGTTATACATGTGGTCAGTGGGAGTCCAGTCCCCAGGGATTGTTTGCTTGTGAGTCTGAGTCTCCATAACAAATGAGGTTTGGATGTGTTTGGAAGGTTGAGCACATGGAGGAGAAACACTTGGTTTGCAATCCATCAAAGATCGAAGTAGGTCACAGAGAATGTGAAAACTGCTTTCAGATTAAAATAGCTCAGTCTACCATTGCAGTCAGGCCACATCTTGCCCGCATCTACTGTGTGTTTCCTGTTCTTGAAAAGAAGGCGTGATACTCTGTATTTTTTGTAAAACTTGCAAGGTACTCGCAATTCTGCCGCATACGTTTTAAAGTTGCTTGACGCTCGGACTGTATAATTTCACATCAATCCCTCTGACTTTCCGCACACTTTCATCATCCTACCATCGGCACCTCATCTGACAAATGGGTCGGACATGCCTGGCCGCTCTGTGCTCAGCTGGGCTGTCTCTTTGTCATCGAGGTTGAGAGATGTGAGGATGGGAAGTCACATACGGCGCCCACACCAGGGACTGGCCAGTGATTAAAATCTGATCTGACGTTAAAAGGGTCTCATTGTGGGTTATCACAAAATTGGCCTCTTCTGCTCTGATGTCTTCAAATAGATGATTCATTTTGTTATGTACTACTTTATTAGCCAACAGGTACTAATAATAGTTTACAAGAAAGTTAACCATTAGTGCTGTGGAGGTGCTATGGTATAAAGGCATCAGATGTCAATATGATACTTTGATATGATACTGAATGATTATCATCAGAGATAATCAATTCTATTGATTTTATTTACTAGTAGTTACACTTTTCAACACAATCAGTTTCTTTAATATTTAATAATGTTTTTGAGATAAGTCTCTTATACCAACCAGGGCTGCATTTATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54456 lncRNA downstream 4263 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA downstream 4263 11640429 ~ 11641264 (-) True G47853
TU54414 lncRNA downstream 140565 11503578 ~ 11504962 (-) True G47812
TU54408 lncRNA downstream 163026 11479106 ~ 11482501 (-) True G47806
TU54403 lncRNA downstream 164735 11479106 ~ 11480792 (-) False G47806
TU54287 lncRNA upstream 56762 11704927 ~ 11708257 (-) True G47705
TU54465 lncRNA upstream 117069 11765234 ~ 11765587 (-) True G47861
TU54467 lncRNA upstream 121773 11769938 ~ 11770242 (-) True G47863
TU54468 lncRNA upstream 123978 11772143 ~ 11772426 (-) True G47864
TU54472 lncRNA upstream 129246 11777411 ~ 11777636 (-) True G47868
CI01000006_11636228_11638176.mRNA mRNA downstream 7351 11636228 ~ 11638176 (-) True CI01000006_11636228_11638176
CI01000006_11627878_11631177.mRNA mRNA downstream 14350 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
CI01000006_11596063_11609407.mRNA mRNA downstream 36120 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11530728_11535297.mRNA mRNA downstream 109627 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11459706_11462546.mRNA mRNA downstream 182922 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11651067_11653761.mRNA mRNA upstream 2748 11650913 ~ 11654424 (-) False CI01000006_11651067_11653761
CI01000006_11659293_11664444.mRNA mRNA upstream 10768 11658933 ~ 11666250 (-) True CI01000006_11659293_11664444
CI01000006_11672314_11695885.mRNA mRNA upstream 23689 11671854 ~ 11695920 (-) True CI01000006_11672314_11695885
CI01000006_11715016_11740679.mRNA mRNA upstream 66540 11714705 ~ 11740763 (-) True CI01000006_11715016_11740679
CI01000006_11753992_11763149.mRNA mRNA upstream 105563 11753728 ~ 11763149 (-) True CI01000006_11753992_11763149
TU54208 other downstream 612400 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 1157092 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 4134571 7510829 ~ 7510956 (-) True G45821
TU51023 other downstream 4668655 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 2198 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 686244 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 698027 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 698094 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 702594 12350759 ~ 12529810 (-) False G48450

Expression Profile