RNA id: TU54715


Basic Information

Item Value
RNA id TU54715
length 292
lncRNA type read_through
GC content 0.34
exon number 2
gene id G48101
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12308142 ~ 12349571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATGAGCAGTGGTTTTCATTTACTGGTTTCATTTTAGTTCATTTAGGACAATCTGTATGATGCAAGAGTTAGCAAAATAACTTGCATACAATTCATACATTTCTGATTCATTACAAGTCACTTAAACTGCAACTTCGAAAAAATGTACAGTATGTGGAGAAGCTTTTGTGGAAACAAAAGTGACAATTAGATTGTATAATTAGGTGTATAAAAAGTGTCTAAGGACCACAGTGTCTTCCCAAGACTTGCCTTAAAGGGATAGTTCACCCAAAAATGAAAAATATCCCATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54700 lncRNA upstream 46798 12259495 ~ 12261344 (+) True G48086
TU54831 lncRNA upstream 79888 12228047 ~ 12228254 (+) True G48214
TU54733 lncRNA upstream 150436 12143871 ~ 12157706 (+) True G48119
TU54727 lncRNA upstream 190122 12103183 ~ 12118020 (+) True G48113
TU54760 lncRNA upstream 302639 12005256 ~ 12005503 (+) True G48146
TU54687 lncRNA downstream 1191 12350762 ~ 12571161 (+) True G48075
TU54872 lncRNA downstream 147783 12497354 ~ 12500200 (+) True G48251
TU54736 lncRNA downstream 169775 12519346 ~ 12532674 (+) True G48122
TU54891 lncRNA downstream 227924 12577495 ~ 12577940 (+) True G48270
TU54693 lncRNA downstream 230754 12580325 ~ 12582476 (+) True G48079
CI01000006_12307031_12307314.mRNA mRNA upstream 823 12307031 ~ 12307319 (+) True CI01000006_12307031_12307314
CI01000006_12298229_12304430.mRNA mRNA upstream 3539 12297797 ~ 12304603 (+) True CI01000006_12298229_12304430
CI01000006_12242654_12249350.mRNA mRNA upstream 58587 12242654 ~ 12249555 (+) True CI01000006_12242654_12249350
CI01000006_12230746_12235389.mRNA mRNA upstream 72617 12229547 ~ 12235525 (+) True CI01000006_12230746_12235389
CI01000006_12219317_12222975.mRNA mRNA upstream 85025 12219317 ~ 12223117 (+) True CI01000006_12219317_12222975
CI01000006_12447621_12461167.mRNA mRNA downstream 98050 12447621 ~ 12461191 (+) True CI01000006_12447621_12461167
CI01000006_12592270_12606447.mRNA mRNA downstream 242267 12591838 ~ 12607314 (+) True CI01000006_12592270_12606447
CI01000006_12608120_12620040.mRNA mRNA downstream 258549 12608120 ~ 12620111 (+) True CI01000006_12608120_12620040
CI01000006_12684154_12695960.mRNA mRNA downstream 333990 12683561 ~ 12696396 (+) True CI01000006_12684154_12695960
CI01000006_12764729_12782405.mRNA mRNA downstream 414345 12763916 ~ 12783368 (+) False CI01000006_12764729_12782405
TU54708 other upstream 28601 12277620 ~ 12279541 (+) True G48094
TU53826 other upstream 669890 11624267 ~ 11638252 (+) True G47318
TU53639 other upstream 786439 11416229 ~ 11521703 (+) True G47159
TU53635 other upstream 870572 11416229 ~ 11416560 (+) False G47159
TU53607 other upstream 1796336 10485358 ~ 10511806 (+) True G47145
TU54695 other downstream 27435 12377006 ~ 12384827 (+) True G48081

Expression Profile