RNA id: CI01000009_00611583_00617762.mRNA


Basic Information

Item Value
RNA id CI01000009_00611583_00617762.mRNA
length 1053
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000009_00611583_00617762
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 611305 ~ 617762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATAAATGGCCTGCTTCTTTAATAAACTGCTTAACTGCACAAGTAATAGTGCAGTAATAGTAAGAGTGCTATAATGGCTGGCATAAGTGGCCATTTTGACAATAATTTGTATTTATTCTGCATTTGATTCATATAATTTCAGCAATTTTGTGTGTCGTTTGCCATTGTATTAAATTGAATACCTTGCTAGATCTGTATTTTTAAATACACACACACACATACATGCATACATATATTTAAAATACAGCATTTACATTAAAAAAGTTTTTCCAGCAGTATGAATGGCCAGCTGGACCTGAGTGGAAAGCTGATCATTAAAGCTCAGTTGGGGGATGATATTCGTCGTATCCCCATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGCGAGTCTTTCGTGGGCAGCTACAGAGCAGCGATGAAGTTGCCATCAAATATAAGGATGAAGATGATGACCTTATCACCATCTTCGACAGTTCTGATTTGTCCTTTGCGATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTGAATGGGCAGCCTCGGCCACTGGAGTCATCTCAGGTGAAGCACCTGCGTAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCCCCCTCAGAGTCTGTCCCAGAGAGCACCAACCCAGAAACCGGTATACACATGAACTCTCCCGGAGTGATTCTCTTGTTCTTCATATCCAATACTGTAACTAAAGCATTTGAAGCATATTCAACAATGAAGCATGCCCCGCCGGTTAGTGCTGCTAGCATGTCTGCATTTGACCCCCTGAAGAACCAGGAAGAGGTCAACAAGAATGTCATTTCTGCATTTGGCTTGTCTGAGGACCCTGCCCCAGTTCCAGCTGTAGCCGCCACCGCTGCTGCAGAGGAGCGCTCTGCTACTCCAGACAGTATTGCCTCTTCATCCTCTGCAGCGCCCCCTTCTGCTGTGGCTCCCCAGGCTCCCCCACCTTACTCAGGGGTCCAACAACCTCCCTCTAGTACTATGGATG

Function

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57876 lncRNA upstream 20692 590132 ~ 590613 (+) False G50855
TU57873 lncRNA upstream 20692 590171 ~ 590613 (+) True G50855
TU57872 lncRNA upstream 20769 590132 ~ 590536 (+) False G50855
TU57733 lncRNA upstream 72794 538171 ~ 538511 (+) True G50735
TU57715 lncRNA upstream 106686 504418 ~ 504619 (+) True G50719
TU57903 lncRNA downstream 5972 623734 ~ 623957 (+) True G50881
TU57905 lncRNA downstream 18712 636474 ~ 636705 (+) True G50883
TU57902 lncRNA downstream 27023 644785 ~ 645049 (+) True G50880
TU57900 lncRNA downstream 76264 694026 ~ 695215 (+) True G50878
TU57924 lncRNA downstream 79843 697605 ~ 697840 (+) True G50902
CI01000009_00608513_00609159.mRNA mRNA upstream 1930 608513 ~ 609375 (+) True CI01000009_00608513_00609159
CI01000009_00605366_00605964.mRNA mRNA upstream 5235 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00603498_00605392.mRNA mRNA upstream 5913 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00547369_00551459.mRNA mRNA upstream 59089 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00541592_00545933.mRNA mRNA upstream 65308 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00620687_00621072.mRNA mRNA downstream 2925 620687 ~ 621537 (+) True CI01000009_00620687_00621072
CI01000009_00704243_00710805.mRNA mRNA downstream 86303 704065 ~ 710805 (+) True CI01000009_00704243_00710805
CI01000009_00719164_00724772.mRNA mRNA downstream 101402 719164 ~ 725051 (+) True CI01000009_00719164_00724772
CI01000009_00805606_00808374.mRNA mRNA downstream 187142 804904 ~ 808404 (+) True CI01000009_00805606_00808374
CI01000009_00852319_00853083.mRNA mRNA downstream 233480 851242 ~ 853461 (+) True CI01000009_00852319_00853083
TU57430 other upstream 515518 94202 ~ 94283 (+) True G50472
TU57948 other downstream 152079 769841 ~ 770233 (+) True G50920
TU57959 other downstream 805085 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1062384 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1276473 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1637337 2255099 ~ 2350486 (+) True G51274

Expression Profile