RNA id: TU59363


Basic Information

Item Value
RNA id TU59363
length 119
lncRNA type sense_over
GC content 0.38
exon number 1
gene id G52100
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1390969 ~ 1391087 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTTGCAGCTGCAGGGCTGCATGTTTCCTCCCTGCACTCCGAGACTGAACCCTAAAACACGGACACGAAAACTTCTGACGCATGGGCGAAAACTCATGGGGTGTTTATACAGTGAAACATGCTGATCCATTCCACATCTGACGAACTACCATGAGCAGCACATCAGAGTCGTGCCTCTGAATACAGCATCTTTCATAGAGGAAAAGGTCAACATTCAGTGAGAGGAAATCATCCTGCACAGCTGGACAACCACAGTGCTGGATCATCTCAGTAAGAGAAAAGAAGAGAGAGCGAGTACAAATATACAACCCTCAGGTGTAAGAGAAGGGATAAGGAAAAAGAAGAGAAGAACAGTCAAACGGTCAAAGCCCTCAAAAAGCCAGTCTACTTCTATGCAATTGACTTTACATTGCTATAGTCTTTAAAACTCTAGATTGATGATCTACCTTGAATATACAGTTTTTTCCCCCAGTGAAGGCCTAATATGTGCTTAATAAACCCGTAAGCTCACCTATAGAATCCCCTGGACTACCCCTAGTGCGTCACTGGCCACCAGAACCTCCCGCTGGATTCACAAGGGTGGTTAGATGTTCTTAAACATCACAAGCCACGTTCTCTGTTTCAAGCTGACCTTGGAATGGCCATTAGGCATGGCTTTGAACTACTGGAACTATCTCTCATAGACCAGTGTCAAGGGTCCCCCTGAGTTGATAATGACTTGCTTTCATAACTGCTGTGACATTTTGTGAAGGTACGCTAGGCGTGCTCACAGGCCATATCTCCAGAATGCAATGCTTCCTTTCCCCCTCAGCAGGTGCGAATCCGAGCTGCATAGTCTGCGATTTACAGTGCTGTGTTTGCGCATCCTGGACTAAGTATAAGCCCGGGCACACGCATATGTCCAGCCTTGATAAGCAATTTGGCTCACTACAGTGTCAACACAAACTCAGAATTACCACAGAACGATCAGCGACTGTATGGTGTTTGGTTTAAACATCATTGCCACAGTTCAGAGATGATTTAGCTACATTATGGATATTTTTGGTATCACAAACCATATGCTATCCCTTGAATCAACTGCTATTGTTTTCATGTGTAAATCTTAAAAGTGACTGCTAAACGAATAAATGTAATGCAATGAATAATGCAATTAAATTGGCCAAAAAAGCCAATACAATGCACTACTCACTAGAATATAGAAATTTGCTTTTAGTTTTTGATAGGATTTACAGTCTAATGGCATAAATAAAAGTCTTTTCAGTCCAGTTTGAACATTAATAGCAAATATCTATTCTGGTGGTTCAAATATCCTCACTCTATCTCATAGAAATCTGACAACACTGTCAGATGGCCTGAAGATATGAATGTCTAATGTTGAAAGCTGAATCTTGTAGGCTGCTGAATGTCTTCATGCCATGTCTAGTTCCTGTGGTTGGAAAAAGAGATAAATTAACTTGCTCACCGTGCCCTTACATAAATGAGGGTTGATGAAACTGATGATAGGCTCGGGCTGCTGAAGAAGTGATCCCAGTGGAGACCTTACAGTGGTCTGTCCCACTCACAAGACAAATTATATAATTAGGCGCTTGTCTTAGGGGATGGCCACCTTTGCCCCTTTCTTGACATCTTCAATGGTAAATGACAGCATATCTTGCTAAAATAACTGAGCAAATTCATCTTGGTGACACAAGCGGAATTCTCTTTACAATTGTATTAATTGTCTGGTTTTGAGAAATCCCATGAAAATGACAATATGCACTCAAGGGAAACATTACATTTGATTATAAAGATGATCATGATTCTGAGAGAATTGCATGAATCAAAAGCAAATTATTTAAACAGTACAGTCATTTGCATAAAAATATTGAAAGAGTCCATGAATATATCTCGGATGAATACATTGAATTAATTCATTTTGGGAAGAATAAAATAGACATGTCTTTTTGTCCAATTCAAAACAAGTGTCCATTTTAGGCATTGTTTTAAAGTTTATTTACACGTCTTAGCTCTTAATACGTTTGGGAATCATCATCGCACTAAAATATGGGTGCTTTTTTGTCTTGTTTTGAAACCCACAATTCTTTATGAAGAATTATCATGCAGCAAAACAGGAACGCCCCCGCAGACAGCTTCTTTTCATCACCTCGTGCTTATCACCGGCATTGTCAAAATGTTCGTTGAGGGCCGGGTGCTCTGCAAGGGGCTCCGATTGAAAAAGCAGAGCCCGGGCTCCTGCCTCGTCCAGGCAGGGTTAAGCCACCTCTCCAACCAGGCGGCCCCCAGCGGAACCCTCATTACTTTGGCTCCTGGAGCAGTCAGCTGTGCTGTGGTTCAGAGAAGAGAGGCTCCTTACCTGAGCATCACTGCTTCCACACGCGCCTTCGCCAACCTGATTTGACAGCTCACGCTCAACTACAGCCTGCTGAACTAAGACATGATAAAAATACATTTCGCTTCGTTCTCTGTGAAATGTCACTGTCTTACTTTTGCTGGGGGTATGTGACAGCACTTAGCTTGACTTGAGACACCTTTTAGTGCCAGGGTTTGTTTGTTTAAATCCACTTCTAGTTATAATTTGTAGTGTTTATGCTGTCTGTATATTCAAATAAAGCTGCCATTTTAGCTTACAGGGCTTTGAGGTGTGTGAGGTTTTAAGTTTATCCCCCCCATGTGGTTTCTCTTCTGTACTAGGCAACATTTTAAATTATGCTATACGCTGTTCTGTGGACACTGCGGTTATGTTATGGAGACAGAAATTGATTTAGTAACTAATTATTAATTATAGCGTGATAAAATAATTGTTTTCATATAAGCGTTCTGAAGGCTACAAATATCAATGTCAAGGCACTAAGCATGTATAAAAAGGAAGCCACCACCATTAGCATTTATAGGTAATGTTAAATTGAAATGTAAAATTCAACTTGAAGTGAGAAATAAAGTGATGATGTTGTCATACTGCGCAAAGAAAAAGGTAAAACGGGCATGAGAAAATGATTCGTGAGCCCTATATATCACACTTCACTCTGCCAAGATTTAATTCATAATAATCTACGTGGTTTGTTTTAAGGAAAAAAAAAGTCTATATTTAATATTCTAAATGATAAAATAAAGATAATGTTGTTAACTTCAAATCAGACGTGAACAGATGTCGGTGTTTGAAACAAGCAAGTGACGTAAAAGTGTTGTGGAGATGTCAAATTTTGCGACGAAAATATTGTGTTAGACTCAGTAGTAAACAAACAAACAAACAAAAAAACTAGACTGTCATGGAACAAAGCAGTATTTCAAGACTTATTTTTCTAATCGAATTTCATTTCCACATTAACAGCTCTCTCGAAGACATCAAATAGATACGTTTTTTTTTTATTGAAGCCAAAATTTCCACAACGTTAAGATAACTTTTTCGTTAATAGAGACAATATTTACGAAATACTGATTTAGTTTAATTAAAAACTTTCACATCGAAAGTATTTCAGCGAACTCAAAAATATATTTTTTAATCTTGCAGTCGAGTTTCCAGTTTGTCTTTTCTGACAGGTAAAACTTGTCAGAAACGACATGAACGGAAGAATGAACACAAACATGAAGAATGTCGAAAAACTGAACTTTTTCTTTGCCGAATTATGACTTAGAAATTTCGGTGCTTCTGTCTGGTGCTTCCTTTATCAAAATGACCATTTCTAGCAGGTTTGGAAGGTTCTTCTCGCCCTGTTGCATTTTTTGCAGTAGTTATCATATGAATTGGTGCATGTTTTTCCCAATAATAGGCTATAATTTAAAAATTCGATCCCTGTAATTCCAGCATATCTTTCAGAATCATTTTAGGCAAAAATGTTGCGATGGATTTTTTTGTAATCAGTCATTCATAAATTAATTTGTACATTCATTCATGTTTACTAAATACAAAAGAGCATTAAATAGCCTAATTTCCCATTCCAAGCAAGTTCAACCAATTAAATATATTTATCTAATTCAAAAGCAGAAAGTTGTCGGCTGCCCTGTCTTTAAATAGCGGTATTCACTCTTCACAAAGTTCTGGGTCTATAGGACAAACATGTTTAATTGGATTAGCAGAGATGATGTCATAAACTACAATTAAGAGCTTGACTGTGCAAACAACAGGCACGCGCTGAACGTGTTAGGAGCACAAGCATATGAAAATTACTGTAAATCATTTTTTATAACTGTACGAAAAAGGTTTATAAGCTTTTTGATAATGTATTTTCTTAAACGATTCAAAGTCCTAGCATTTTCAAAATAACAGTATAGCCTCAAACAGAGATAATTATAACATTTAACAGATAGTAAAAATAAAATATAGACAGAATGATTAAATGCTTTGGACTTTCTGTCAAATGAATTAATTTTGGCGAGAGCAATTCAGTGACTGCAAATCATAAGAGACACTAAACACAGATAATGTTTATATGTCCCGTAGGACCCATGTCCTCCTCCCTAGTGTCTATAGTCTTTCTAATATAGTCCGTAATTAACTTTGTTAATGTTCCGATTTCAAAACCAGATCAACAATTTCTTTATAATTACTGATAACACTTTTCAACAAGACATGATCAAATTTTATGTTCTGTTGTTCACGTTTTCATTTATATTCATGGCTGGATTTAATGTCAGTCCATGTCACATTTGTAACTTGACCTGTGCTGTGAAAATTGATTTGTTCAGGATCACATGTAGTAATGTTTGTTAATGTGATATAAAACAGGAAACTATTTAAGAGAGAATGTAAAGATGTAGGTGTTTTAATGGCTTGTTTAAGAATGCGGACACGGTAAGATTACTCACGGAGAACCTGTGTCAAGGGAAGGTGATAAACCAGCGGCTCGTGCTCCCATGACTCAATACCTGACAATTAAGTGAACTGGAAAAGATGTGAGCTTGTGTAGGTGGTTAGGGTCACGCCAAGATATACCCAAAGCGTAGAGGCCTTTTTAAATTCAATACTAGGACTTCACGGGCATCCCGGGTAAATTTTAAATGACACTGAAGACAACGATTGCCTTACGGACACCTTAAAACAAGCCCTTCTATTACATGACTTCTTTTATCAATATATTCTTCTCTGCCAACCTTCGCATTTCAGCTATAAATGTGCATCGACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59365 lncRNA downstream 68384 1305269 ~ 1315480 (-) True G52102
TU59353 lncRNA downstream 99957 1283543 ~ 1283907 (-) True G52096
TU59197 lncRNA downstream 113839 1267951 ~ 1270025 (-) True G51951
TU59351 lncRNA downstream 117252 1266178 ~ 1266612 (-) True G52094
TU59348 lncRNA downstream 139620 1242744 ~ 1244244 (-) True G52091
TU59425 lncRNA upstream 34987 1426074 ~ 1431565 (-) True G52160
TU59420 lncRNA upstream 55407 1446494 ~ 1450926 (-) False G52157
TU59421 lncRNA upstream 55407 1446494 ~ 1450926 (-) True G52157
TU59517 lncRNA upstream 297985 1689072 ~ 1703392 (-) True G52244
TU59541 lncRNA upstream 501892 1892979 ~ 1893288 (-) True G52267
CI01000009_01327537_01337349.mRNA mRNA downstream 46018 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01293719_01294750.mRNA mRNA downstream 88901 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01264011_01272894.mRNA mRNA downstream 110524 1263607 ~ 1273340 (-) True CI01000009_01264011_01272894
CI01000009_01257207_01258196.mRNA mRNA downstream 125668 1256477 ~ 1258196 (-) True CI01000009_01257207_01258196
CI01000009_01208525_01212914.mRNA mRNA downstream 169347 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
CI01000009_01394603_01397604.mRNA mRNA upstream 3471 1394558 ~ 1398473 (-) True CI01000009_01394603_01397604
CI01000009_01423940_01424233.mRNA mRNA upstream 32624 1423711 ~ 1424573 (-) True CI01000009_01423940_01424233
CI01000009_01541031_01546978.mRNA mRNA upstream 149807 1540894 ~ 1547804 (-) True CI01000009_01541031_01546978
CI01000009_01550846_01564109.mRNA mRNA upstream 159697 1550784 ~ 1565168 (-) True CI01000009_01550846_01564109
CI01000009_01596212_01681960.mRNA mRNA upstream 204614 1595701 ~ 1682027 (-) True CI01000009_01596212_01681960
TU59360 other upstream 10845 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 846436 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 846436 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 846436 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 846651 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074443 False 4937 lncRNA 0.36 2 NC_007120.7 31264412 ~ 31271926 (-)