RNA id: CI01000009_01423940_01424233.mRNA


Basic Information

Item Value
RNA id CI01000009_01423940_01424233.mRNA
length 863
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000009_01423940_01424233
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1423711 ~ 1424573 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATACATTTCTTGAAAGATTTTTATTTTAAGCTGTAAATTGAATTCACTGCCTCCTGAATTAAACAGATAGTTCATCCAAAAATGAAAATTCTGTCATCATTTTCTTGCCCTCAAGTCGATAATTTCTATATCTTTTTGTTTTGTGTGTGTGTTCCACGTTAGAATGAAAGTCATACAGGTTTCAAACAACATGAGGTTGAGAAAATGATGATAGAATGTTTATTTTTGAGTGAACTGTCCCTTTAAATTCATGCTCTGAATGGGCTGCACTGAAACTAGCCTGGCTTGGCCTCTCATTGTCATCTTAAAACAACATTAATCAACTGCGATAGGCCTACATGACCCTCAAACCCACCTTACTGCTAGATTTACCTCAGACAAGTCAAATTCAAGTGGTGTTAATTTTAAGTTTAGGGCTCTCCCACCTCCTCCCACAGGCCCTTAGCTGCCCCAGTGACCCCTGGGCTAGTTCCACTCACTGCTGCAGGGGAGCGTGTCAGCTTGGGGGCCATCTCGATCGCCCCAGCATGCCATGGGGCAGGCAAGGCTCTGCACAGCATGGGAAAGAGAGCGTCCGTGCCGGTTTTAAGGTCATGCTAATTGCCACACTCCTCCGTCGTGCCGTCACTTAGCGGCGGAGGCTGCATTCAGAGTATGGTGCAGGTGTTGGGTGCCCTTTAAACCTTTAATTAAATATCACTGTAAAAGGTTAATGCAGAAAGCCAGGTATTACAGCCTGCAATGAGCGTGCAACCGTAAAACTCTATTTGAGTCTAGTGTGTGAAGGATTGACCTGACGGTTATTTTACCAAATGAAATGGCAAGATGAGTCAGAATGAGAAAACCCCCTGTTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59363 lncRNA downstream 32624 1390969 ~ 1391087 (-) True G52100
TU59365 lncRNA downstream 108231 1305269 ~ 1315480 (-) True G52102
TU59353 lncRNA downstream 139804 1283543 ~ 1283907 (-) True G52096
TU59197 lncRNA downstream 153686 1267951 ~ 1270025 (-) True G51951
TU59351 lncRNA downstream 157099 1266178 ~ 1266612 (-) True G52094
TU59425 lncRNA upstream 1501 1426074 ~ 1431565 (-) True G52160
TU59420 lncRNA upstream 21921 1446494 ~ 1450926 (-) False G52157
TU59421 lncRNA upstream 21921 1446494 ~ 1450926 (-) True G52157
TU59517 lncRNA upstream 264499 1689072 ~ 1703392 (-) True G52244
TU59541 lncRNA upstream 468406 1892979 ~ 1893288 (-) True G52267
CI01000009_01394603_01397604.mRNA mRNA downstream 25238 1394558 ~ 1398473 (-) True CI01000009_01394603_01397604
CI01000009_01386589_01389680.mRNA mRNA downstream 33562 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
CI01000009_01327537_01337349.mRNA mRNA downstream 85865 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01293719_01294750.mRNA mRNA downstream 128748 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01264011_01272894.mRNA mRNA downstream 150371 1263607 ~ 1273340 (-) True CI01000009_01264011_01272894
CI01000009_01541031_01546978.mRNA mRNA upstream 116321 1540894 ~ 1547804 (-) True CI01000009_01541031_01546978
CI01000009_01550846_01564109.mRNA mRNA upstream 126211 1550784 ~ 1565168 (-) True CI01000009_01550846_01564109
CI01000009_01596212_01681960.mRNA mRNA upstream 171128 1595701 ~ 1682027 (-) True CI01000009_01596212_01681960
CI01000009_01743393_01795392.mRNA mRNA upstream 318545 1743118 ~ 1795461 (-) True CI01000009_01743393_01795392
CI01000009_01925054_01944771.mRNA mRNA upstream 500362 1924935 ~ 1944771 (-) True CI01000009_01925054_01944771
TU59360 other downstream 16084 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 812950 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 812950 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 812950 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 813165 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59632 other upstream 814887 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738

Expression Profile