RNA id: CI01000009_01541031_01546978.mRNA


Basic Information

Item Value
RNA id CI01000009_01541031_01546978.mRNA
length 1845
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000009_01541031_01546978
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1540894 ~ 1547804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGAAATGGAACAATCTGTTTAAAATATGTGCCAAGTTTTTAGAAATGTGCTCTTTATATTTATATTCTCGTTGGTTTCATATGCTTATGAAAGAAATTATGTTTTACACATGACATTTACAACCTGAAATTGCCTTGCTTTGTCATAAAAAGGTTAAAATATCTGATATTTTAAGAGACTTGTTGACCTTGACGTAGTCATGGGGGTCTGAATAAGTTCTCTATCTATCATTTCCTGCATTTTTTTTTTTTGAATGTTAATACTTACATGACTTGTAGTTTTGCTAAAATATATATATTTTTAAGAAATAATAATAAAAGGTTATGCCAAACCCCTTAATTATTTTAATGAGGCTTTTTTTCTATTATGAAATCATTCTTTTTTATATTTTTTTTGGGAGCATAAGCCCCCAAAATATCTAAATCAATTTCAAGTACCTAATTGCATTTTATGTATTTCTGGATAAATACACTGGGGGGAAAAAAAAAAAAAAATGGTGTAGAAACAATTTTCAATCAGAAATTGCTATTAAATTTCACAAATAATTACAAAGAAATGGCCAATAAAACAGACTGAAATAGTATTTTCTTGAAAAACATACTTATACTTTTTTACAACTTTTAAAAATTATTTTTTACAGTTTAGCAAAAAATGAGTGTCACCTTATTGATCTAGTAGACAACTTAATAGCGTAAAACAAAAGAATAAACATGAAAATATACACATAAAAAAAGCCAGTCTTATTGTTTAAAATAAAAAAAAAGTCTTCCTCAGGGAGGCAAATGGAGAGAATATGGAGAGCCCTAGCTGTTTTGCAAAACAAAATGAGATGCTCTGGATCTTACAGAGAAAGAAAAAGTGCACTGAGATGGAAATTTATTAACTGGCACCAGTTAATGTGTGCATTATTCATTTCTGCACCACCCCTCTTTAGCTCAGCGAGGGCAGCGAGGAGGAAACCGTGCCAGTGGCATATGGCTTGCCACTGCGCTAAACATCCATACTACAGACAGGTCCATCAGTCACAGCTCTGGCCGTGTGAGAGGCGAGTATGGGTGCCTGATAGATGGTGTTTAGAGCTTACCTGCTGTTACGACATCACCACTGAAACACTGGGCTCCCCCCAAAAGCCCACGCCGACACTGGAAACCGCAAAGCGTGAAATACTACGTCTGGAAGTGCCTACCGAGTCGGCCGAGTTACAACAAATAATAGATAAGCTATTTAAACCCTCAGTTAGGGACCCTGGGTCAGAGCCGCGCACATGCCAATTAATACGCAACATCTGCCATAGAGGGAATGTATATGAGGAGCCTAGGTTCGATTCTGGTGCTCTGCTCGCCTGGCAGCCCCAGTCAGACACGAGTGAGCAGGGCCAGAGGGGTTGTGTTCTCCCTGTGCCTCCCAGCCCGACGGACACCACCACCACAGTGCTGCACGCAGGACGCCAGCGCTGTCTTCTGGCACTTCCTGGGGCCAGTGCCGACTCAGCGTGGACACAGACTTACTCAGCAGCCACACCTTTACACCAGACTCACTCACACAGAAAACACTCACACACACATCCACAGCAGCACACGCTCCAAGATACTGGCCTGTTCCTCTTGTCACCGACTGACGGCTGCACTCCAGCGCGAGCGATGCTAATTAAAGTCCACCCACAGCATGATTCACCGAGTGGTGAGAGGAAAAGATATGGAGCATAGAGGTAAGAGAAGAACCGTGGTTTTGCTCAACACTGTTGAATAGCCACTACTGAAACGCAACACTATGAGACTTGTCTAAATTAGAATGAAGCTTTACTCCGCTGGACTCTCTCTGCATCAAGACACTCTGGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59420 lncRNA downstream 89968 1446494 ~ 1450926 (-) False G52157
TU59421 lncRNA downstream 89968 1446494 ~ 1450926 (-) True G52157
TU59425 lncRNA downstream 109329 1426074 ~ 1431565 (-) True G52160
TU59363 lncRNA downstream 149807 1390969 ~ 1391087 (-) True G52100
TU59365 lncRNA downstream 225414 1305269 ~ 1315480 (-) True G52102
TU59517 lncRNA upstream 141268 1689072 ~ 1703392 (-) True G52244
TU59541 lncRNA upstream 345175 1892979 ~ 1893288 (-) True G52267
TU59548 lncRNA upstream 426398 1974202 ~ 1975539 (-) False G52274
TU59549 lncRNA upstream 426398 1974202 ~ 1975828 (-) True G52274
TU59493 lncRNA upstream 442817 1990621 ~ 1991986 (-) True G52222
CI01000009_01423940_01424233.mRNA mRNA downstream 116321 1423711 ~ 1424573 (-) True CI01000009_01423940_01424233
CI01000009_01394603_01397604.mRNA mRNA downstream 142421 1394558 ~ 1398473 (-) True CI01000009_01394603_01397604
CI01000009_01386589_01389680.mRNA mRNA downstream 150745 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
CI01000009_01327537_01337349.mRNA mRNA downstream 203048 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01293719_01294750.mRNA mRNA downstream 245931 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01550846_01564109.mRNA mRNA upstream 2980 1550784 ~ 1565168 (-) True CI01000009_01550846_01564109
CI01000009_01596212_01681960.mRNA mRNA upstream 47897 1595701 ~ 1682027 (-) True CI01000009_01596212_01681960
CI01000009_01743393_01795392.mRNA mRNA upstream 195314 1743118 ~ 1795461 (-) True CI01000009_01743393_01795392
CI01000009_01925054_01944771.mRNA mRNA upstream 377131 1924935 ~ 1944771 (-) True CI01000009_01925054_01944771
CI01000009_01954952_01964842.mRNA mRNA upstream 406755 1954559 ~ 1965237 (-) True CI01000009_01954952_01964842
TU59360 other downstream 133267 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 689719 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 689719 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 689719 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 689934 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59632 other upstream 691656 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738

Expression Profile