RNA id: TU59629


Basic Information

Item Value
RNA id TU59629
length 72
RNA type TUCP
GC content 0.41
exon number 1
gene id CI01000009_02239426_02240738
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2239421 ~ 2240796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTAAAAAATACAACAAACATCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAATCGCAGTGACTACTCTGGTCGGGACCACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGATGAGAAGAGCCAGCAGAGAATCCCAGTTATAAAATACATCCGACATCCTAAATTTCAACGTAATAATGAGAAGGACTACAGCTATGATATCATGTTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59626 lncRNA downstream 21988 2214952 ~ 2215535 (-) True G52342
TU59622 lncRNA downstream 79777 2157412 ~ 2157746 (-) True G52338
TU59501 lncRNA downstream 141471 2094368 ~ 2096052 (-) True G52230
TU59493 lncRNA downstream 245537 1990621 ~ 1991986 (-) True G52222
TU59549 lncRNA downstream 261695 1974202 ~ 1975828 (-) True G52274
TU59660 lncRNA upstream 147550 2388314 ~ 2388539 (-) True G52371
TU59610 lncRNA upstream 159050 2399814 ~ 2400894 (-) True G52328
TU59612 lncRNA upstream 160271 2401035 ~ 2401380 (-) True G52330
TU59668 lncRNA upstream 186485 2427249 ~ 2427848 (-) True G52378
TU59670 lncRNA upstream 207602 2448366 ~ 2451640 (-) True G52379
CI01000009_02228671_02232977.mRNA mRNA downstream 4546 2227624 ~ 2232977 (-) True CI01000009_02228671_02232977
CI01000009_02167959_02200058.mRNA mRNA downstream 37465 2167363 ~ 2200058 (-) True CI01000009_02167959_02200058
CI01000009_02001400_02018841.mRNA mRNA downstream 216882 2000456 ~ 2020641 (-) True CI01000009_02001400_02018841
CI01000009_01981245_01988092.mRNA mRNA downstream 249431 1980696 ~ 1988092 (-) True CI01000009_01981245_01988092
CI01000009_01954952_01964842.mRNA mRNA downstream 272286 1954559 ~ 1965237 (-) True CI01000009_01954952_01964842
CI01000009_02247894_02249252.mRNA mRNA upstream 7010 2247774 ~ 2249286 (-) True CI01000009_02247894_02249252
CI01000009_02251416_02262823.mRNA mRNA upstream 10397 2251161 ~ 2262823 (-) True CI01000009_02251416_02262823
CI01000009_02286191_02288884.mRNA mRNA upstream 45396 2286160 ~ 2288981 (-) True CI01000009_02286191_02288884
CI01000009_02300395_02301213.mRNA mRNA upstream 59345 2300109 ~ 2301637 (-) True CI01000009_02300395_02301213
CI01000009_02327693_02335035.mRNA mRNA upstream 86929 2327693 ~ 2335035 (-) True CI01000009_02327693_02335035
TU59360 other downstream 829896 1401932 ~ 1407627 (-) True G52098
TU59706 other upstream 310960 2551724 ~ 2562533 (-) True G52410
TU59711 other upstream 642924 2899254 ~ 2899407 (-) True G52415
TU59814 other upstream 1020439 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1976656 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 3261631 5502395 ~ 5505248 (-) False G53515

Expression Profile