RNA id: CI01000009_02885473_02893975.mRNA


Basic Information

Item Value
RNA id CI01000009_02885473_02893975.mRNA
length 776
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000009_02885473_02893975
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2883688 ~ 2893975 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCAAAGCTAATTTTCCTAGTCTATAAACTCAAAAATTTCAGTTTACAAATTGAAAAAGGAGATTGGAAGCCAGAGAGGGAAACATTTCCTCAGGTTTTTGGAGTCAGTTACCCTAAGGGCTCTGCTACTCCTTCTCCCCCTCATTACACCAAACCTTTTAGCAGTCGTGGCTCGGAGACAGTCAAGCTTTCTTTTGTTTTACCTGTGGAAGTTGCGGACAATATGAGGAACTCAGTCGCTCTGGGCCAGCCTGGGATTCTACTTCTTCTGGTCACATGTCCTCTGCTGACTATCCTGCAGGGTGTCACCTGTAAGGCAGAGAGTGGACATTTAGGGGACAGTGATCCTGACAGGTGTATGAGACATCATTTTGTTGAGACCATCACACATCCTATCTACAAATGCAATTCAAAGCCAGTGAACTCCAGCGATGTAGCCAGGTGGATCACTGACCCCTATAAATCGGTCCTGCGAAGTGCAAAGCCTTTCATCTGTCACACAACAATCCTCACAAAGCAGATGAGGCAAATTTGTGAGATTGAGATGGTCCTCTTGGCTCGATGTGAGGGTCACTGCAGCCACACGTCCCGCTCAGACCCCCTGATCTCTTTCAGCTCCGTCCTGAAGCAGCCTTTCAAAAGCACGTGTTTCTGCTGTCGTCCACACACCTCCAAACTGAAGGCAGTACGTCTGCGATGCTCGGGCGGGACACGGATAACCGCTACTTACCGTTACATCCTTGCGTGCAGCTGCGAGGAGTGCAGCTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59776 lncRNA downstream 61540 2822962 ~ 2823928 (-) True G52478
TU59767 lncRNA downstream 74134 2811045 ~ 2811334 (-) True G52469
TU59702 lncRNA downstream 306490 2574486 ~ 2578978 (-) True G52406
TU59705 lncRNA downstream 318904 2563762 ~ 2566564 (-) True G52409
TU59737 lncRNA downstream 371797 2512957 ~ 2513671 (-) True G52440
TU59786 lncRNA upstream 18330 2912305 ~ 2912542 (-) True G52488
TU59787 lncRNA upstream 19143 2913118 ~ 2913345 (-) True G52489
TU59873 lncRNA upstream 89620 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59874 lncRNA upstream 101674 2995649 ~ 2995905 (-) True G52553
TU59818 lncRNA upstream 111589 3027695 ~ 3033677 (-) True G52503
CI01000009_02844171_02861309.mRNA mRNA downstream 24159 2843011 ~ 2861309 (-) True CI01000009_02844171_02861309
CI01000009_02786421_02791586.mRNA mRNA downstream 93033 2786311 ~ 2792435 (-) True CI01000009_02786421_02791586
CI01000009_02682050_02707583.mRNA mRNA downstream 177845 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
CI01000009_02654102_02655554.mRNA mRNA downstream 229030 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02610459_02610721.mRNA mRNA downstream 274747 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02904768_02914992.mRNA mRNA upstream 10716 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_02916137_02917550.mRNA mRNA upstream 21666 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02975388_02982670.mRNA mRNA upstream 81413 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_03006152_03007243.mRNA mRNA upstream 111411 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_03009238_03025860.mRNA mRNA upstream 114385 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
TU59706 other downstream 322935 2551724 ~ 2562533 (-) True G52410
TU59634 other downstream 644704 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59814 other upstream 367228 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1323445 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2608420 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5531846 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5964177 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile