RNA id: TU59711


Basic Information

Item Value
RNA id TU59711
length 154
RNA type TUCP
GC content 0.37
exon number 1
gene id G52415
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2899254 ~ 2899407 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAGTAAAAGAGAAACAGAGAGAGGGGAGAGAGCAAGTGGATGAGGGAGAGGGAGAGATCTAAAGGCAATTGTTGCTTAAGAAATTTCATTTCTGTCCTAGAGGAGCCAGCTGGGAATTTGGATATTGCAGGTTAAACAGCACCAGGCAGAAGATACATACAGGCCACTCAAGGGGATGGCTGAGTTTAAAGAGAACGCTCACTACACGTTTCGGTTCACGTATGTGGCATCAACAACACAGTGGAGACCTCTTCGTTGTCTTCTGTAGGAGACAGTCAAGCTTTCTTTTGTTTTACCTGTGGAAGTTGCGGACAATATGAGGAACTCAGTCGCTCTGGGCCAGCCTGGGATTCTACTTCTTCTGGTCACATGTCCTCTGCTGACTATCCTGCAGGGTGTCACCTGTAAGGCAGAGAGTGGACATTTAGGGGACAGTGATCCTGACAGGTGTATGAGACATCATTTTGTTGAGACCATCACACATCCTATCTACAAATGCAATTCAAAGATGGTCCTCTTGGCTCGATGTGAGGGTCACTGCAGCCACACGTCCCGCTCAGACCCCCTGATCTCTTTCAGCTCCGTCCTGAAGCAGCCTTTCAAAAGCACGTGTTTCTGCTGTCGTCCACACACCTCCAAACTGAAGGCAGTACGTCTGCGATGCTCGGGCGGGACACGGATAACCGCTACTTACCGTTACATCCTTGCGTGCAGCTGCGAGGAGTGCAGCTGAATAAATTTGTCATGGAGAAAGACCCTCTGGCTGAAACACATTTAAAAAAAAATTGAAAGTACACTTTATTACTGATGATTCAGAGCAACCATTATACGATTCATTAGCACTGCAACAAATGTTGCCAACAACCCATCAAGACTTCAAGAAGAATCGCATCACATGTAAAGCGGCCCATACACTCGGATTTCCAGATGTTGGCCCGCCCGTTGCACCTGCGCATGCGCTCAGCCAGTCAATTTACTTTTATTGCATTCCATTGTTTTGATCACCGCGTGTGTAAAATAGCGGATGCCGACAACAACATTGTAAATCTTGAGAGAAATTTGATGAAGCTGAGGGGGAGTCACTTTGGCGGACTGTTTTACAATATCTGAGAGATTTGAAACACAGACCAGGACAGAAGACTGGATGTTTGCATAGAAAATGCAAGTGGTGAACTATATAAACTTGATTTATGTCTAGGATAGAATTTAAATGGATAGTTCAACCAAAAAAAGAAAAGAAAAAAGAGTCCAAATGACTTTACTTCTTCTGCAGAACACAAAAGAATACTGTTTTAACTATTTTATTTAACGAAAGTCAGTGGAGTCCAAAACAACATTGGAGCCCATTGACTTAGACATCTTTTGTGTTCCACAGAAGAAAAACAGGTTTAGAACAACGAGAGGGTGATTAAATGATGACAGAATGTTCATTTTGTGGTGAATTATCCCTTTAAAGTACCTGGAATTGCCCACATGTTTCGGCACACATTTTTGCTTCATTATACCAGCTTAACATTTGAACAATGAAAAATACTCTTGTAAAAATCATATTGCCAATTTTAGACTTCGTAAATCTCCTACAGGTTTTTCCTGTGGGGTTCACAGCCATCTACCATGCCAGACTGTATGTGGAAAATGTCTGCGTTAAATCTGTTTATTTCATCATCAAAGTCGCGCAATGGCTCATGACACATAATAGCAGCAAGTTGTCAAGCTAATCACTTACAGTTATAATAACTATGATGTTTGCATTGTGGAATTGTACAGTAAATGACAAATATCATATAATATCATATAAAAAAAATGAAAGCAAATGTATTGTTCCTCAAATTTCTCAAGTCTGTGGAAATAAATTCACCCTCTACAAACTGCTGAAATTGTACCGCTGGGAAATTATGACAATTTGCTTGCTGGACAGGTTTGTACTCCACTACAAACATGACAGCTTTTTGGGCTCTGCACATGAATCTAATAAACAGTGCCCTTTTGTTTTTAAAGACTGACTGGCTGCCTTGTGCTAGCTGTCTTGTTACACATACTTTGGCTCCTCGATACAATGTGACTTTGAGTGGGGCTATAATTAACTTAATGGCTAATTTGACAGCATGACAGACAGTCCACATAATAGCTGTCAGTTGAGTTCTCTGTAATTTTTATGGCTGCCCCAAGACATCTCCCTACACGATCGGCTGCAGTCAAAGCACCTAACTAAATGACACATCATGTTGTTCTCTGACCTTCCATTAATTCTAACAGAACATTCCAGGTGTTGTACACGTGTGTGTCTTTATCCCTTCTCAAACAAGTAATAATTTAAGCAAAACCGACAAGTGATTCAAACAGAATGGTTTGTTAAATATATCACCTGATTACTATTAATTGAAGCCAGTTCCAATTTTGGCCAAAGAGTGTGACTTTTTCTTCTTGTGTGGTGTCCAATTGAGTGGGGAAAAAACACATTTAACCATCTAAAACACAAGAAGGTAAGTTTGTTCTTGCCAAGAATGTTGAAGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59776 lncRNA downstream 59760 2822962 ~ 2823928 (-) True G52478
TU59767 lncRNA downstream 72354 2811045 ~ 2811334 (-) True G52469
TU59702 lncRNA downstream 304710 2574486 ~ 2578978 (-) True G52406
TU59705 lncRNA downstream 317124 2563762 ~ 2566564 (-) True G52409
TU59737 lncRNA downstream 370017 2512957 ~ 2513671 (-) True G52440
TU59786 lncRNA upstream 12898 2912305 ~ 2912542 (-) True G52488
TU59787 lncRNA upstream 13711 2913118 ~ 2913345 (-) True G52489
TU59873 lncRNA upstream 84188 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59874 lncRNA upstream 96242 2995649 ~ 2995905 (-) True G52553
TU59818 lncRNA upstream 106157 3027695 ~ 3033677 (-) True G52503
CI01000009_02844171_02861309.mRNA mRNA downstream 22379 2843011 ~ 2861309 (-) True CI01000009_02844171_02861309
CI01000009_02786421_02791586.mRNA mRNA downstream 91253 2786311 ~ 2792435 (-) True CI01000009_02786421_02791586
CI01000009_02682050_02707583.mRNA mRNA downstream 176065 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
CI01000009_02654102_02655554.mRNA mRNA downstream 227250 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02610459_02610721.mRNA mRNA downstream 272967 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02904768_02914992.mRNA mRNA upstream 5284 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_02916137_02917550.mRNA mRNA upstream 16234 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02975388_02982670.mRNA mRNA upstream 75981 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_03006152_03007243.mRNA mRNA upstream 105979 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_03009238_03025860.mRNA mRNA upstream 108953 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
TU59706 other downstream 321155 2551724 ~ 2562533 (-) True G52410
TU59634 other downstream 642924 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other downstream 642924 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59631 other downstream 642924 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 643209 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU59814 other upstream 361796 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1318013 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2602988 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5526414 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5958745 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074532 False 811 mRNA 0.48 3 NC_007120.7 33734850 ~ 33749556 (-)