RNA id: CI01000009_03378591_03380390.mRNA



Basic Information


Item Value
RNA id CI01000009_03378591_03380390.mRNA
length 1535
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000009_03378591_03380390
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3378559 ~ 3381365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTCTCGCGATATAAACTTTTCCCGGTTACCTGAGGAAACGAGAGTTTGATTCAAAGTGTTTGAATGAACGATAACAACCAAAACTCGTCCTGATAACAGCAGGTAGAGTAATGCAACTAGTTACGTTTTATCCTGTACTGTTTACCGATTAAAAATACGTTTCTTTAGCGTTGTTGTGGAATACTGGCGATGTTTATGTAATTATTTACCCGTTGTCCGTTAGCTGTGGAAGTAGATGCTGCGTGTTGTCAGCTAGCAACCGCAATAAGCCAGCCTATTTCTGTCATATTTTAGCTTTGGTTCTGTTTAAACACGTTTTTTTGGCTTATGTGTGGAACTGTGAGGAAAAATAAAGTGAGCTTAATGAGATATTTACGGTGTGTTTCTCCAGTTTTGTCCTCCGCGGTGGGATGTTTAGTAACCAAAGTTGACGCCTCAGTATCATAGCAACTGCATTTATTAATACTGTTAAACCATAAGAGAGTAAATACGAAATCTGTAAAAACCCATTAAACTTCGAGTAAAATTTTAAGTATTTTTGACACTGGAACCGAATACCAAGTTACCATAGTAAAAGTGACTATATGAGTGGTAGGACCTAAATTACCATGGTAATTTTTGTAAAGGGTAAATTGATGCAAGCTTCTTGGTAGTGAGTAAAGATTAGCAAACATTTGTTTGTGCTGTGTTTATGTTCTGTTTAATTTGTATGACAGATGAAAAATAAAGAATTAAAATAATTTCAGTAAAATTTCCGTCTTTGTCTTGTAGTTTTATACCGAATACCTTTGTCTATATATATATATGTGTGTATATGTATGTATGTATATATGAATCAGTCATTTGTGAATTGCTTAGTGCATGTTCAAACATTAAATTTGGCAAAGGAGTTTGATGATCTTTTCTGCTTTATTCTTTAGGTCATTTTTATCTTTTTTGGGGGGAGGATCTTGGCTGCATGAAGCTAACCAGAAATGGCATCACCACAAACACTTCAGCCTGTCCTGAAGATGAAGGTCGATGAGCTCTTCCTCTTTTGGTTAAGTGAGCCGAGTACTCAGGCGATGCTAAAAGACTACCTCAACAAAATCAAGAATGGCGAAGAAATAGACCTAAGTCATGGCGATTTTAAGAGCACAAGCACTTTATTAACAGAAAACAACAACAACAACATTGCATCAAAGACTAATGCGACGGACAGAATGACTGCGGCCCTTGGTGCTCCATGCAGCCCTCCTTCCGCCACGCTGCCATCTGCGAGTGGCAGCAATAACAGAGCGGGAGTGAATGCGAGGGCCCTGCGACGCTCCGTCAGCACTAAGAAGGCTAAAGGAATTCCAGAATACAAACACATCTCTAAAGTATTAGTTAAAAATTCAATTAACGTCATTCTGATGCTCATCGGAGCAACTGTTCCAGCGTTGACACAGGACACCGGTAAAGATAGCCTTGGTTCCTCTGTGCAGGAATTAACTACTGGGAATTTGGCTTACACTTCATAGGCAGTTTACATATTTGTCCATGGTGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59928 lncRNA downstream 75898 3300949 ~ 3302661 (-) True G52606
TU59811 lncRNA downstream 87736 3287318 ~ 3290823 (-) False G52501
TU59812 lncRNA downstream 90633 3287318 ~ 3287926 (-) True G52501
TU59831 lncRNA downstream 99226 3278744 ~ 3279333 (-) True G52513
TU59913 lncRNA downstream 154760 3223490 ~ 3223799 (-) True G52592
TU59949 lncRNA upstream 619 3381984 ~ 3386060 (-) True G52623
TU59965 lncRNA upstream 25298 3406663 ~ 3406876 (-) True G52639
TU59998 lncRNA upstream 72978 3454343 ~ 3454550 (-) True G52670
TU60056 lncRNA upstream 266349 3647714 ~ 3647979 (-) True G52725
TU60066 lncRNA upstream 349535 3730900 ~ 3731251 (-) True G52735
CI01000009_03358707_03369503.mRNA mRNA downstream 8982 3358008 ~ 3369577 (-) True CI01000009_03358707_03369503
CI01000009_03306370_03311820.mRNA mRNA downstream 66739 3306289 ~ 3311820 (-) True CI01000009_03306370_03311820
CI01000009_03292206_03295043.mRNA mRNA downstream 83516 3292206 ~ 3295043 (-) True CI01000009_03292206_03295043
CI01000009_03264437_03267242.mRNA mRNA downstream 111317 3264437 ~ 3267242 (-) True CI01000009_03264437_03267242
CI01000009_03261739_03262843.mRNA mRNA downstream 115716 3261038 ~ 3262843 (-) False CI01000009_03261739_03262843
CI01000009_03568782_03574843.mRNA mRNA upstream 187290 3568655 ~ 3574843 (-) True CI01000009_03568782_03574843
CI01000009_03582190_03582916.mRNA mRNA upstream 200825 3582190 ~ 3583445 (-) True CI01000009_03582190_03582916
CI01000009_03591700_03598877.mRNA mRNA upstream 210063 3591428 ~ 3598877 (-) True CI01000009_03591700_03598877
CI01000009_03599584_03602070.mRNA mRNA upstream 217984 3599349 ~ 3602070 (-) True CI01000009_03599584_03602070
CI01000009_03614390_03616151.mRNA mRNA upstream 232426 3613791 ~ 3616619 (-) True CI01000009_03614390_03616151
TU59814 other downstream 116602 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 479152 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 816026 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1137795 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1138080 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 836055 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2121030 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5044456 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5476787 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8906852 12288217 ~ 12289518 (-) False G59097

Expression Profile