RNA id: CI01000009_04069741_04071278.mRNA


Basic Information

Item Value
RNA id CI01000009_04069741_04071278.mRNA
length 941
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000009_04069741_04071278
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4069714 ~ 4071604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCTTGAATTAATTATTGAATTAGCATACAATTTAAGAGTGTAACGGTTTCATAGCATGACATAGCTTATCAAACCTGATGTGGCCAGCTGAAACACTGCAGATCTTGATAGATAAGGGCTGGGTGCTAATTGGTTGTAAATACAGAGGCGGAGAGAACCTTTAAACGTAGCTAATTATCAACCTTAAAAAAAACTTCTTGAGAGGGTTTAGTAGTTGTCTTCAGTTCTTGAACAATAGCAGCATTTTGGAGTTTTTTGGGTTTTGTGGTACTTTGGGTCACTAGTCTTTTGTGTGCATTGGCACAAAGTCAACAAGCCTTCCAATGGCCTGGCAACAAACTTCTTTGAGTTTCGAGGCGAAACAGCCAGCACCTCAGGCAGATCCTCTTCAGAAGTGCAATGTGGAAGACTATGAGAAGGTGCAGTGTGGAGAGCCTGGCATTTCTTCTGCAAACTGTAATGCTATAAACTGCTGTTTTGATGGACAGCAGTGCTATTATGGCAAAGCAGTGACTGTCCAGTGTACAAGAGATAGGCAATTTGTAGTTGTGGCAATGAGAGATGCAACTCTTCCACAACTGAGCTTGGAGTCTATCAGTCTTTTGGGAGGAAGTGATCCTCCTTGTGGTCCTGTTGGCACTACTGTAGCTTTTGCCATCTACCAGTTCCCTGTCACTGCTTGTGGCACTATGATGATGGACGGTGACTTTCTAGTCTATGAAAATCGTGATACTTTATCACGAATGTCTTCTACCTATAAAATCTTCATTCATTGCAGTACATCAGTTTGCTCCCCAACTGCAGCAGACTCTTGTGTTCAGAGTTGCAACAGGAATAGGAGAGCTGCTGGGACACTAGAAGCAGATGGTATCCGTGCAGTTGTCTCCAGTGAAGTTATCCTTAGTTTCTAAGTTTTCTCTGACTCATCTTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60104 lncRNA downstream 6053 4063231 ~ 4063661 (-) True G52773
TU60101 lncRNA downstream 21453 4047823 ~ 4048261 (-) True G52770
TU60074 lncRNA downstream 326161 3743327 ~ 3743553 (-) True G52743
TU60070 lncRNA downstream 333575 3735823 ~ 3736139 (-) True G52739
TU60067 lncRNA downstream 338181 3731313 ~ 3731533 (-) True G52736
TU60176 lncRNA upstream 35543 4107147 ~ 4107370 (-) True G52831
TU60223 lncRNA upstream 209741 4281345 ~ 4281805 (-) True G52878
TU60358 lncRNA upstream 255882 4327486 ~ 4327685 (-) True G52995
TU60366 lncRNA upstream 287983 4359587 ~ 4441120 (-) False G53002
TU60367 lncRNA upstream 287983 4359587 ~ 4479642 (-) True G53002
CI01000009_04015167_04016764.mRNA mRNA downstream 52877 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_03791699_03858262.mRNA mRNA downstream 210480 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_03770045_03770497.mRNA mRNA downstream 299217 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_03699312_03715114.mRNA mRNA downstream 354600 3699312 ~ 3715114 (-) True CI01000009_03699312_03715114
CI01000009_03668956_03672426.mRNA mRNA downstream 397288 3668792 ~ 3672426 (-) True CI01000009_03668956_03672426
CI01000009_04196309_04197268.mRNA mRNA upstream 124705 4196309 ~ 4197268 (-) True CI01000009_04196309_04197268
CI01000009_04738315_04741396.mRNA mRNA upstream 666625 4738229 ~ 4742426 (-) True CI01000009_04738315_04741396
CI01000009_04778332_04780190.mRNA mRNA upstream 706449 4778053 ~ 4786216 (-) True CI01000009_04778332_04780190
CI01000009_04888729_04895882.mRNA mRNA upstream 816593 4888197 ~ 4896479 (-) True CI01000009_04888729_04895882
CI01000009_04976520_04987680.mRNA mRNA upstream 904882 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
TU59814 other downstream 807757 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 1170307 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1507181 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1828950 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1829235 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 145816 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 1430791 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4354217 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 4786548 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8216613 12288217 ~ 12289518 (-) False G59097

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074591 False 1461 mRNA 0.45 8 NC_007120.7 35631440 ~ 35633827 (-)