RNA id: CI01000009_05362086_05363378.mRNA



Basic Information


Item Value
RNA id CI01000009_05362086_05363378.mRNA
length 1161
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000009_05362086_05363378
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5362042 ~ 5364081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAGTTTGAAATCTGAGATCAAGGTTATTCTTCAATCCTATCTATATGTCAGAATTTTAGGTTTTAGAATTGACACGAGTTTTTAAAGCCTAAAAAAAAGCATGCTTGTTCAGAATTAAAGTGGGAAAAATAGCTTAAAAGCAAATTTCCTTAGGGTTTGTATCTCAGCATCTCATCTGTTTAAAGGATGGGAGTCATGGGACCTATGAAAAAAAACAAAACAAAACCGAGGAGGCATGACTCTGTTGACTGCAAACAATAAGATCTTTTGTCTTCTCAGACTGTCACAGAAAAATTTAATTCTCTTCGCATGTCACAAAGGTGCTGTGGTTACAGACAAGCATGATGATGAAGACGAGTAGGATATTCCAGAATATATCATCTTCATTTACAAAATCAAAACACAAGAGAAAAGCTCACCACACTTTAACGTGAATGAGAACCGAGAATAAAATAACTGAAACAGAGTAGCAGCTTAATATATGGTCACCTCAATCAATAAAATTCTTATGATGCTCCTCATTTTGTAAGTTTCTTACAAAATATATAAAACCTCTGCTACTTTGTTAATTTATGTTGTGTTAAATTGTTCTGAACATGACAACAAGCAAACACCACTGTCACTTACATACAGCTGTGAATGTAGACCCGCCCACTTATCCAAATCGCTGTGCACTGACACATAAGTTGACCAATAGAAACAATGATTGGCAACTTGTGCAAACAACTATCCAATAGGATCGCACACGCCAGCGCTGATGATGTTGCTGCTACTGCACCAGGAGCTTTGGAGATACCTATCTGCACAGCACGGATGAAGACTCCTTCGCTAAAGGACACTTGTGAGGTCATCTTGGGGTGTACAGCTTGTGTGGATCAATGCATCAATGCGCACGCACCATGGAGTCGTACTCTGCACGGTCATCTCTCACCAAACCACACTTTTGCGGACACTATTTGCTCCTGTCATGAAAACGTGGAGATCAAGCGTGATGGGCGTAGGAAGGGGTTAGAGAATCGTAATTTGTACCCAGAGGTGGTTTGTGTTTATGAATTGAAATGTGGCGCACAATTACTCCCTCTGCTGTTTACGTCCTCTAATGCTCTAGCCAACTGAGGATGTGTCCCAAATGACTACTTTGTATAGCCTATTTAATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60842 lncRNA downstream 110283 5250290 ~ 5251759 (-) True G53425
TU60893 lncRNA downstream 120692 5240424 ~ 5241350 (-) True G53476
TU60832 lncRNA downstream 344884 5013895 ~ 5017158 (-) True G53415
TU60555 lncRNA downstream 514939 4846901 ~ 4847103 (-) True G53173
TU60549 lncRNA downstream 523271 4838462 ~ 4838771 (-) True G53167
TU60820 lncRNA upstream 1685 5365766 ~ 5367842 (-) False CI01000009_05367161_05370504
TU60821 lncRNA upstream 1685 5368144 ~ 5368380 (-) True G53405
TU60906 lncRNA upstream 5499 5369580 ~ 5369781 (-) True G53487
TU60909 lncRNA upstream 10189 5374270 ~ 5374719 (-) True G53490
TU60917 lncRNA upstream 23240 5387321 ~ 5387664 (-) True G53498
CI01000009_05278137_05361256.mRNA mRNA downstream 564 5277137 ~ 5361478 (-) True CI01000009_05278137_05361256
CI01000009_05190789_05192684.mRNA mRNA downstream 169152 5190494 ~ 5192890 (-) True CI01000009_05190789_05192684
CI01000009_05110455_05136845.mRNA mRNA downstream 223728 5110205 ~ 5138314 (-) True CI01000009_05110455_05136845
CI01000009_05046374_05094978.mRNA mRNA downstream 266069 5046300 ~ 5095973 (-) True CI01000009_05046374_05094978
CI01000009_04976520_04987680.mRNA mRNA downstream 374335 4976486 ~ 4987707 (-) True CI01000009_04976520_04987680
CI01000009_05367161_05370504.mRNA mRNA upstream 1854 5365935 ~ 5370504 (-) False CI01000009_05367161_05370504
CI01000009_05402729_05410456.mRNA mRNA upstream 38423 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05513478_05515588.mRNA mRNA upstream 149188 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05571226_05587885.mRNA mRNA upstream 206420 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05675971_05682578.mRNA mRNA upstream 311691 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
TU60172 other downstream 1130573 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2100085 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2462635 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 2799509 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 3121278 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU60944 other upstream 138314 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 3061740 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3494071 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6924136 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6924136 12288217 ~ 12288977 (-) True G59097

Expression Profile