RNA id: CI01000009_05759177_05759509.mRNA


Basic Information

Item Value
RNA id CI01000009_05759177_05759509.mRNA
length 772
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000009_05759177_05759509
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5758999 ~ 5759770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCCTAAAACATTGCAATATAATCAGGGCGTGCCCAATAAATCGCACAATGCATCAAGGACATTAGAGAAGATTAAATAATTCCTGAATGATATAAGAGTATTACACCCTGATTCCACCAGGCAGCACACATTTGGTCTAACCAGGGTGAGAAAGAAGCCAACAAAAAGGGGAAACCCCACATATATGAACTGCGAAGATGCATAAAGAAAACCAGAGATGGTGTGCATCCATATTTCGTAGCATTTTAAATGATCAGCCATGCATCAAAATTTCCCACCCTGGGTTTGTGTTGCTCTCCCGTTTGCCTCCCCTCCCTCTGCATGCAACAACTACAGCCGCCATGATCTCTTTGTTTCCAACGGGCCGAACCCAAACCAGACTTATATGCCATTCGGGACGAGCCCTTTCCCTCCGGACACTTGTCTCCTCTTACCGATACAGACTCCCTCCGTCACTCTCGAGCCCTCGGAGCTCCACTTTTATTCAGGCCGACACGTAAGAGACCGCGTCAGGCTACACCTCCGTCGCGTCACCGAGAACAACAACACAGAGAACGAGACGAAAATCCGATCATCAACCCCACTGCACTGAGCGAGAGCGGCCGAGAGCGTGGCGGAAAAAGCCGAGTGGTGACGATTACAGACGAAGCGTGGCCGAAGCTTGGCGAAATAATGCGAATACGACACACTTACAAGATTTTGTGAATGAATCTCGACAAATGTTTTTAAAAACAGAAAATTGTTTAGTATACATAGAAACATCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61479 lncRNA downstream 6834 5751940 ~ 5752165 (-) True G54000
TU61476 lncRNA downstream 12211 5746575 ~ 5746788 (-) True G53997
TU61467 lncRNA downstream 28135 5730634 ~ 5730864 (-) True G53988
TU61390 lncRNA downstream 162321 5585039 ~ 5596678 (-) True G53916
TU61005 lncRNA downstream 205898 5552890 ~ 5553101 (-) True G53566
TU61530 lncRNA upstream 233415 5993185 ~ 5993404 (-) True G54032
TU61570 lncRNA upstream 259276 6019046 ~ 6019356 (-) True G54065
TU61573 lncRNA upstream 262843 6022613 ~ 6022827 (-) True G54068
TU61582 lncRNA upstream 281688 6041458 ~ 6041667 (-) True G54077
TU61595 lncRNA upstream 294414 6064021 ~ 6064255 (-) True G54089
CI01000009_05724421_05725824.mRNA mRNA downstream 33165 5723841 ~ 5725834 (-) True CI01000009_05724421_05725824
CI01000009_05675971_05682578.mRNA mRNA downstream 75616 5675772 ~ 5683383 (-) True CI01000009_05675971_05682578
CI01000009_05571226_05587885.mRNA mRNA downstream 170984 5570501 ~ 5588015 (-) True CI01000009_05571226_05587885
CI01000009_05513478_05515588.mRNA mRNA downstream 243411 5513269 ~ 5515588 (-) True CI01000009_05513478_05515588
CI01000009_05402729_05410456.mRNA mRNA downstream 348543 5402504 ~ 5410456 (-) True CI01000009_05402729_05410456
CI01000009_05784097_05785842.mRNA mRNA upstream 24295 5784065 ~ 5785842 (-) True CI01000009_05784097_05785842
CI01000009_05798886_05836104.mRNA mRNA upstream 38112 5797882 ~ 5838430 (-) True CI01000009_05798886_05836104
CI01000009_05844758_05855489.mRNA mRNA upstream 84358 5844128 ~ 5855944 (-) True CI01000009_05844758_05855489
CI01000009_05949578_05961385.mRNA mRNA upstream 189808 5949578 ~ 5961385 (-) True CI01000009_05949578_05961385
CI01000009_05977117_05981366.mRNA mRNA upstream 216343 5976113 ~ 5982698 (-) True CI01000009_05977117_05981366
TU60944 other downstream 253751 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1527530 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2497042 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 2859592 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3196466 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2666051 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 3098382 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6528447 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6528447 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 8215618 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile