Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU61110 |
| length | 455 |
| RNA type | TUCP |
| GC content | 0.57 |
| exon number | 1 |
| gene id | G53655 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 5860302 ~ 5860756 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU61092 | lncRNA | upstream | 14478 | 5844049 ~ 5845824 (+) | False | G53646 |
| TU61093 | lncRNA | upstream | 14646 | 5844049 ~ 5845656 (+) | True | G53646 |
| TU61133 | lncRNA | upstream | 79184 | 5780584 ~ 5781118 (+) | True | G53676 |
| TU61080 | lncRNA | upstream | 113351 | 5746575 ~ 5746951 (+) | True | G53637 |
| TU61075 | lncRNA | upstream | 117836 | 5742252 ~ 5742466 (+) | True | G53632 |
| TU61191 | lncRNA | downstream | 103395 | 6036196 ~ 6036429 (+) | True | G53723 |
| TU61201 | lncRNA | downstream | 112720 | 6045521 ~ 6045723 (+) | True | G53733 |
| TU61123 | lncRNA | downstream | 132266 | 6065067 ~ 6095605 (+) | True | G53666 |
| TU61118 | lncRNA | downstream | 282272 | 6215073 ~ 6215460 (+) | True | G53661 |
| TU61126 | lncRNA | downstream | 282867 | 6215668 ~ 6244368 (+) | True | G53669 |
| CI01000009_05772094_05781990.mRNA | mRNA | upstream | 78075 | 5770623 ~ 5782227 (+) | True | CI01000009_05772094_05781990 |
| CI01000009_05761849_05767932.mRNA | mRNA | upstream | 91599 | 5760983 ~ 5768703 (+) | True | CI01000009_05761849_05767932 |
| CI01000009_05704310_05721474.mRNA | mRNA | upstream | 138296 | 5703993 ~ 5722006 (+) | True | CI01000009_05704310_05721474 |
| CI01000009_05696405_05703318.mRNA | mRNA | upstream | 156381 | 5695671 ~ 5703921 (+) | True | CI01000009_05696405_05703318 |
| CI01000009_05685508_05688628.mRNA | mRNA | upstream | 171669 | 5685508 ~ 5688633 (+) | True | CI01000009_05685508_05688628 |
| CI01000009_05968963_05974380.mRNA | mRNA | downstream | 34658 | 5967459 ~ 5974750 (+) | True | CI01000009_05968963_05974380 |
| CI01000009_05983361_05989883.mRNA | mRNA | downstream | 50560 | 5983361 ~ 5990583 (+) | True | CI01000009_05983361_05989883 |
| CI01000009_05992944_05994452.mRNA | mRNA | downstream | 60143 | 5992944 ~ 5994492 (+) | True | CI01000009_05992944_05994452 |
| CI01000009_06002120_06017019.mRNA | mRNA | downstream | 69319 | 6002120 ~ 6017782 (+) | True | CI01000009_06002120_06017019 |
| CI01000009_06130188_06193279.mRNA | mRNA | downstream | 197263 | 6130064 ~ 6193404 (+) | True | CI01000009_06130188_06193279 |
| TU60796 | other | upstream | 321248 | 5522242 ~ 5522356 (+) | False | G53388 |
| TU60791 | other | upstream | 321248 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU58746 | other | upstream | 2651318 | 3202772 ~ 3208984 (+) | False | CI01000009_03202999_03207060 |
| TU58751 | other | upstream | 2651779 | 3202772 ~ 3208523 (+) | False | CI01000009_03202999_03207060 |
| TU58749 | other | upstream | 2651996 | 3202772 ~ 3208306 (+) | False | CI01000009_03202999_03207060 |
| TU61103 | other | downstream | 312763 | 6245564 ~ 6248392 (+) | True | G53651 |
| TU63847 | other | downstream | 3196499 | 9129300 ~ 9130286 (+) | True | G56100 |
| TU64139 | other | downstream | 3920558 | 9853359 ~ 9853515 (+) | True | G56323 |
| TU65813 | other | downstream | 5827985 | 11760786 ~ 11760858 (+) | True | G57782 |
| TU65844 | other | downstream | 6001141 | 11933942 ~ 11935251 (+) | False | G57811 |
