RNA id: CI01000009_06072320_06072613.mRNA


Basic Information

Item Value
RNA id CI01000009_06072320_06072613.mRNA
length 2210
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000009_06072320_06072613
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6072173 ~ 6074382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAAATACAATGACGATCTAAAATCTGAGCACACAGTGACTTCTTCACAATAGCCCATACCAAAACTTTCAGCTGACACAGAAATGACTCCCAACGGAGTCAAAGCCCCTTCCTTTCATGTCTCATTAGCATGTAATACATGTGGATAGTAGGACAGACAGAAAGACAGAAATAGTAGAGGAAAAAGTATCTGAAAGTGAGAGACAGACTGAAAGAGAGAGACAGGGAGAGTCATGCTTTTCACAGTTAAGTAACACAGTCCATAGTTATCTACGGTAATGACAGGTCCATAATTAGCACAAAGCTAATTCACTGTGATGCAAAAATGGCTCACTATCTCTCTTTCCCTCCCTCCTATCGTTTTATCTGTCTGCCGCATGATTTCTGGGCATTTCTTCTCTCTACTTCCTGCTTTGTCTGACTCTCTGCACACAGACTTTGTTTACTCAATATCGCAAGGAAGCCTCTTGTGATTAACCAAATAAATAGCATCATCACTGAGGACAAACCAAAAAATTTAATGTTGATTTTTTTGCCGGCAATGTTTCCAAATCATAAAACACTCCAGACACTTGAGCTGTACAAGAGCTGGCATCGGGTTAAAGGAATATGATTAATTTATTCATGCGGCTGAGAAAATAAATTACACACACCACAAATCAGATCACATATTTTCACTTCTAAATTCTCTTCTAAATTGTGAGCTCTTTCTCTTTGGTGAATTTATACTCATTATATCTGAATTGGAATTAACTCATATTAAGGCCCACATGGAATCTGCTGACTTTGCATTTTGTAAATTTTTTGAGGAAAATCAGCAGAATTTTGTGGAATGAATTTAAATGAGGGAGAATGCAGGATAACTGAGTCTTAGGGTGTAGTTCAGTTCTCTTGGTTCTTTTGGACCAGACCAAAAAAGAGAATGATACATTTAGTCCTGGTTCTCTTAGCATTCACACTGTCAAACATCATGTCCTGTTTTGAGTCCACTTGTTTGGTGCGTGCCAGGGTTCGGATGGCAGCGTTCACACTTAATCAAAAGAACCACATTAGCAGAGCAATCACATCAGAGTTTGTATTAATTGAACCAAATCTGCCAAATGTGAACGCACCCTTAACGTTTTATTAGTTGCCTAAAGCATCACCAAATTTGGCGAAATATTTAACGGAACATTGTCCGGGCTCTCTGTCAACTTCTGTGGTTAAAACATAAAATTGCATGTTTTGGAGCAATTTACCTTTTTTTTTTTCTGTACGTCAAATGTACTTCTGAAAGCGCACTAGTCTTTGCAAAGTAGCTGGCCCTTTTTTTATTGTTTACAGACATGACGTAAATGCAAACAATGACCGAAGCCGGGAAATTTCCCAGCAAATTGAATCAGACATCTCTGAAAATAAAACATTATTGTGGGCTTCCTGGTAAGGCAAGAACACTGATTTGACTCAATAATTCATTTTCTGTGGAGTTTTGCAGGCACAGATTCCACAAAGGCTTGTTTAATAATGCTGCCAAAGAATTACAGAACAAAAATTCTAAGCTAATGCTAATATGAGTTTCTGTTAGTAGCCAATACTCATGTTTATCCATTATTTATCCAACTATGTTGGAACTGGGTGTCTCACTCTCTCTGTCTGTCTCTCTCTATTTTTCTGTCAGTCATTCTCAGTATTAATGCATTCGTAATATTGTGCAGCGATTCCTCTGGGAGTCAGTCAAATGGTCTTACACCCTTCTATGCCATAGGGAGGTCTTTAAAGCAAGGAAACATGACAGCATTATACCTTACCTCAGAGAGCAGCTATCCCAAAGCCCAAAAGTCCTCACAAAGTCTTGAAATTACACTGTGGAGGAAACAGCATTGGATCACTGAGGGAAAAAAAAGGATACAGCCGTACTCCTCCGGAACGAGAGCCGACGGCAAGGATCTTCTGCACCGGGTCAAATGCCAGAGCTGTGGGCTGATAGGGAAATCCATGACGCACCGTCTACAGAGGAATGAAAACAGAGAAAACATGAAAAAAGCGAAAACTGTGTGCTGTGTCAAGAACAAAGAACTGTAGGCAACTTCAGTCATTCATTTCCACACAATAGTGACACAGCCTACGGCCTGCCTGCACCCCCTGCGACTCTTCTGAGAACATTTCACATGAGACAATTCTTGCTGCTCAATGTGCAGCCACCTGCTCCTTTCCCTCTCCTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61595 lncRNA downstream 7918 6064021 ~ 6064255 (-) True G54089
TU61582 lncRNA downstream 30506 6041458 ~ 6041667 (-) True G54077
TU61573 lncRNA downstream 49346 6022613 ~ 6022827 (-) True G54068
TU61570 lncRNA downstream 52817 6019046 ~ 6019356 (-) True G54065
TU61530 lncRNA downstream 78769 5993185 ~ 5993404 (-) True G54032
TU61650 lncRNA upstream 130029 6204411 ~ 6204799 (-) True G54137
TU61677 lncRNA upstream 391592 6465974 ~ 6530279 (-) True G54156
TU61914 lncRNA upstream 460712 6535094 ~ 6535317 (-) True G54387
TU61938 lncRNA upstream 495243 6569625 ~ 6569834 (-) True G54411
TU61944 lncRNA upstream 499528 6573910 ~ 6574168 (-) True G54417
CI01000009_06046712_06060022.mRNA mRNA downstream 11731 6045874 ~ 6060442 (-) False CI01000009_06046712_06060022
CI01000009_05994558_06000514.mRNA mRNA downstream 71659 5994558 ~ 6000514 (-) True CI01000009_05994558_06000514
CI01000009_05977117_05981366.mRNA mRNA downstream 89475 5976113 ~ 5982698 (-) True CI01000009_05977117_05981366
CI01000009_05949578_05961385.mRNA mRNA downstream 110788 5949578 ~ 5961385 (-) True CI01000009_05949578_05961385
CI01000009_05844758_05855489.mRNA mRNA downstream 216229 5844128 ~ 5855944 (-) True CI01000009_05844758_05855489
CI01000009_06124385_06127298.mRNA mRNA upstream 49404 6123786 ~ 6128578 (-) True CI01000009_06124385_06127298
CI01000009_06214501_06218695.mRNA mRNA upstream 139913 6214295 ~ 6218832 (-) True CI01000009_06214501_06218695
CI01000009_06228655_06235149.mRNA mRNA upstream 153296 6227678 ~ 6236617 (-) True CI01000009_06228655_06235149
CI01000009_06237366_06242607.mRNA mRNA upstream 162776 6237158 ~ 6242627 (-) True CI01000009_06237366_06242607
CI01000009_06246303_06248176.mRNA mRNA upstream 171188 6245570 ~ 6248176 (-) True CI01000009_06246303_06248176
TU60944 other downstream 566925 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 1840704 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 2810216 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 3172766 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 3509640 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 2351439 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 2783770 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 6213835 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 6213835 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 7901006 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile