RNA id: CI01000009_06205817_06207701.mRNA


Basic Information

Item Value
RNA id CI01000009_06205817_06207701.mRNA
length 667
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000009_06205817_06207701
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6205817 ~ 6207711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAATGTGAGAATCCCGTTCGAGCAGAAAGAGCTGGATGGTGTGTTCACGGTCCCTGCTGACGTCACCGAGGAACGCACAGCTATGGTGTTGACGCACGGCGCGGGGGGAGACATGCACAGCAAACAGCTGGAAAGTCTCGCGCACGCTCTCGCTCGTTCTGGTGTTTTGTGCCTGCGATTCACCTGCAGGGCGGTGAACTTTCCGTATAGAGTCAGAGCTTATAGAGCCGTTGTGGATTACTTAAGAAGCCATGAGAGATTTGCACCAGACAGCATTTTCTTGGGAGGGCGCTCTATGGGTGCTCGTACAGCTGTTGCTGTGTGTGAACATATGTGTAGACAGAAGGATGTAGTCCAGGGTGTTCTGTGTTTGTCATTCCCACTGACTCTACCAGGAAAACCACTAACATATGTTGAGCGGAGCCGAGACCTGTGTGAGCTCTCACAAACTTCTGTGATGTTTGTTTCTGGCACTGCAGATAACATGTGTGAACAGAGACTTCTACAAAATATCATGCATGTCATGAATAGCCCTTCTGCCGTTCACTGGGTCAAGGATGCAAACCATGGACTCAAAGTACGTGGCAGAACAGAAGAATCAGTACTGGAGGAAGTCAATCCACAGATTATTGCATGGGTACTACAAAACAAATGAATGTACGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61123 lncRNA upstream 110212 6065067 ~ 6095605 (+) True G53666
TU61201 lncRNA upstream 160094 6045521 ~ 6045723 (+) True G53733
TU61191 lncRNA upstream 169388 6036196 ~ 6036429 (+) True G53723
TU61132 lncRNA upstream 310205 5859197 ~ 5895612 (+) True G53675
TU61093 lncRNA upstream 360161 5844049 ~ 5845656 (+) True G53646
TU61118 lncRNA downstream 7362 6215073 ~ 6215460 (+) True G53661
TU61126 lncRNA downstream 7957 6215668 ~ 6244368 (+) True G53669
TU61360 lncRNA downstream 312188 6519899 ~ 6530269 (+) True G53886
TU61364 lncRNA downstream 329438 6537149 ~ 6537383 (+) True G53890
TU61375 lncRNA downstream 362700 6570411 ~ 6570613 (+) True G53901
CI01000009_06195742_06204011.mRNA mRNA upstream 1468 6195742 ~ 6204349 (+) True CI01000009_06195742_06204011
CI01000009_06130188_06193279.mRNA mRNA upstream 12413 6130064 ~ 6193404 (+) True CI01000009_06130188_06193279
CI01000009_06002120_06017019.mRNA mRNA upstream 188035 6002120 ~ 6017782 (+) True CI01000009_06002120_06017019
CI01000009_05992944_05994452.mRNA mRNA upstream 211325 5992944 ~ 5994492 (+) True CI01000009_05992944_05994452
CI01000009_05983361_05989883.mRNA mRNA upstream 215234 5983361 ~ 5990583 (+) True CI01000009_05983361_05989883
CI01000009_06212264_06213131.mRNA mRNA downstream 4553 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_06943591_06952628.mRNA mRNA downstream 733913 6941624 ~ 6953067 (+) True CI01000009_06943591_06952628
CI01000009_06975071_07009147.mRNA mRNA downstream 767360 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_07051811_07054331.mRNA mRNA downstream 843007 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_07091022_07092696.mRNA mRNA downstream 883207 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
TU61110 other upstream 273016 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 666763 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 666763 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 2997893 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU58747 other upstream 2998331 3202905 ~ 3207486 (+) False CI01000009_03202999_03207060
TU61103 other downstream 37853 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 2921589 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 3645648 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 5553075 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 5726231 11933942 ~ 11935251 (+) False G57811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074307 False 827 mRNA 0.48 5 NC_007120.7 27393468 ~ 27396427 (-)