RNA id: CI01000009_07101768_07105835.mRNA



Basic Information


Item Value
RNA id CI01000009_07101768_07105835.mRNA
length 1417
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000009_07101768_07105835
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7101269 ~ 7106009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATAAATGGCCGCATGTTAACCACATTTGACGTGCTGCACAAAAGGGGACACCGCGGGTCCCATGACGCAACCTGCAACAACTGAAACCCACCGCCCCCCTGCTTCCTCACCTCACCTCCTCCTCCTGCTTTGCCCATCCTAACAGGGAGAAAAAAAGACATGAGGTGCAGTGATTGGGTGAGGCTGGGACGTCAAGTGCAGAGAGAGGCAAGACAATTTGTCGCTAGGCTGTAAAGACTCCTCAGCATTATGCCTGACTGGGCTTTTTGACCCAATGCCATGTCGGCGCAGTGACAGGCCCCAAAACTGGAAAAAAAAAAAAAAACAAATAAGAAAGTTTTTTGAAAGACTTTCCTTTCTGTAAGTTTCCAAAAAGCATAAATGTATTTGTTGGAAATTTAAAATAATAATTATAAATAATAATGTTAATACATTTTGTTAACCTAGACAAATCTAAAGTGACATTTCAAAGCTGGCAAAATAAAATGTAGCTTAACATGATCACTCGACTTTGGTTAATTAAACACTCCATAGGTATGATGAATTTACTGTCATCTGAAAGATTGATGGGACTTGCAAGACCCCTATGCATCCGACTAAAGCGCATTTGTGATGACAGGCCTGCAAACAGGCCGTTACGGAGCGGAAAACTTTACTTTGAGCATTTGCCATGGACCTCTCTTCCTTTGGAGCCCATTCAGCAACCAGAGGCTGCTTTGACGGGGCCATCAGATCCAATCCTCCTGAGTGCTAGCGCTTACACTAAGGAAGAGGATCATTTAGCCCAGGAATGTAAAGCACAGGACATCCTCTCTGATAAGGAGCAGGCATGCCTTGCCCGAGGTTGTGGGCCAGGAGTTATCGACTTGAAAGGCAGCAAGTCAGCACTACACTCAGGCCTTGGCTTCTTGACATACCTCATTATTGACCTTGGTAAATCCTCGCTGTTTAGGCTAACGGCAATTCGGCGCCACAAAATGTCACAGCGCTACTCTGCACTCACTCATGAAGAAAATGTGCACATGATAACTTGTAAAGTACAGCCTCTGACTATGGAAACATCACATGCTATCTTGATCACCATGGCCGACGTGGGTGTTTTTGGCACTCTTAGGCCAACTACCCACACCCAACGTAGCGATGGACTGCATAAAACAAGAGCTGTGGTATTTGAAGCTGTATCATCTAGTAGAGAGTGGGAGAGCAAGAGAAAAGAGGAGGGAACAGACTCACTACTGTGAATTGCCCATTCCGGTTAGTCACAAGTGACACAGGACTAACGAAGCCTCCGGTGGTGTTCTCCTGTCCCTCTTAGCAGTGACAGATGCTAGGAGAACAGAGTCAGATAAAGCTCTCTGCACTAGCTTGGAGAAAGAAAAAAACTGGGGGATGGGCTTAATGTAGCTTAACTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62246 lncRNA upstream 143341 6957719 ~ 6957928 (+) True G54694
TU62239 lncRNA upstream 155228 6945823 ~ 6946041 (+) True G54687
TU62158 lncRNA upstream 160477 6915187 ~ 6940792 (+) False G54626
TU62156 lncRNA upstream 181393 6915187 ~ 6919876 (+) False G54626
TU62180 lncRNA downstream 4342 7110351 ~ 7115443 (+) True CI01000009_07111833_07115320
TU62305 lncRNA downstream 14486 7120495 ~ 7120779 (+) True G54752
TU62332 lncRNA downstream 50872 7156881 ~ 7157158 (+) True G54779
TU62514 lncRNA downstream 95681 7201690 ~ 7201927 (+) True G54946
TU62520 lncRNA downstream 105393 7211402 ~ 7211650 (+) True G54952
CI01000009_07091022_07092696.mRNA mRNA upstream 8468 7090918 ~ 7092801 (+) True CI01000009_07091022_07092696
CI01000009_07051811_07054331.mRNA mRNA upstream 46644 7050718 ~ 7054625 (+) True CI01000009_07051811_07054331
CI01000009_06975071_07009147.mRNA mRNA upstream 91852 6975071 ~ 7009417 (+) True CI01000009_06975071_07009147
CI01000009_06943591_06952628.mRNA mRNA upstream 148202 6941624 ~ 6953067 (+) True CI01000009_06943591_06952628
CI01000009_06212264_06213131.mRNA mRNA upstream 887454 6212264 ~ 6213815 (+) True CI01000009_06212264_06213131
CI01000009_07111833_07115320.mRNA mRNA downstream 5713 7111722 ~ 7115422 (+) False CI01000009_07111833_07115320
CI01000009_07316335_07346664.mRNA mRNA downstream 210326 7316335 ~ 7346664 (+) True CI01000009_07316335_07346664
CI01000009_07361747_07377615.mRNA mRNA downstream 255738 7361747 ~ 7378451 (+) True CI01000009_07361747_07377615
CI01000009_07392574_07395739.mRNA mRNA downstream 286472 7392481 ~ 7395770 (+) True CI01000009_07392574_07395739
CI01000009_07440170_07459782.mRNA mRNA downstream 334030 7440039 ~ 7460409 (+) True CI01000009_07440170_07459782
TU61103 other upstream 852877 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 1168468 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 1562215 5522242 ~ 5522356 (+) False G53388
TU60791 other upstream 1562215 5535245 ~ 5538095 (+) False G53388
TU58748 other upstream 3893345 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU63847 other downstream 2023291 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 2747350 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 4654777 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 4827933 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 4827933 11933942 ~ 11935251 (+) False G57811

Expression Profile