RNA id: CI01000009_07953250_07953748.mRNA



Basic Information


Item Value
RNA id CI01000009_07953250_07953748.mRNA
length 1343
RNA type mRNA
GC content 0.51
exon number 2
gene id CI01000009_07953250_07953748
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7952718 ~ 7954139 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTTAAGTGGATTAAAATGATGGGGGAAACGTTAAATTGTTGTTTTCATGTAAATATTATTTACATATCACGTGAGAGTTGAAAAGACGATTAGGAAATAACTATTTATACGGTAACACACCAAATAGCTCGCCCCGACCATCAGTATACTAACTAAAACCGGTCTTTAACATCTTTTTTTACAGCAGCAGTGAACTGCAAAAGCTTGCATCACCTCACATTAGGATCAATTTAGGTTCATAACTTATGCTACTTGTATGATAAACAGCCGTCTTTCGTTGCCAAGGGAACGTCAAACCGTATTCCCTTCAACGCAAGGATCAGCGGACTACTTGAACATCTTACCCGAGCAATTCCATCCAGTTGGAGTCTGACAGTCGCTGAGAGAGGATGGGAAAGCGCCAAGTTGTTGCACCGGGAAAGTGGCGAGAAAGGACAAGACTGCAATCCATACCCAGTGTCCCACTATCCGGCTCCACTGGTGTGGACTTCGGGGCTCGTGTAGGGCCGCCGCCACCGAGACACCCATCTCAGTTCCCCCGACACAGCTCACAGACGCGCCCTGGTCCTAATGTTGTCAACTTTGCCGAGCAAGGATCCGCCCGAAGCGAGAAGGTGCAGATGCGGAATGAGAGAGGTCTGGGTGCGATGACAGGGGAGGGGATGGTATCGGGAGGAGAGTGGGTAAGCGGGATGTTCAGGAAACAAGGCAAAAATAAAAAGACGCAAGGGGTGTTTTCGAGAAACACAAATGGGGCAAAAATCATATATCCCATTCGAGTGACATGCCGAAGTTACAACATCCACTGAAGCGCCGGTTAGAGAGACTGTCCTCCGTCCTCACTCCGTGCGCTCGCGGTGAGCCTTGAGTTTGTCAGAGTCTCGCGGAGGGCCATTCCACTGTACCTGTGAACCACAATAACGCACTGAAGGCGAGCGGCAGGTTTCCAGACCGCTTCGGATCACGTGTTCTGAAGGAATCGGGAGGGGCGGGACTGTGCCGCGGCTCTGATTGGTCGGTAGGGATGCAGGAGTGTCAGGAGCGAGGCGATGGTCCAGCTCGAGCATATCGACGGCCAGTGCAGAATAGTGTACCCTGTAGTCTACTTTAACAGGGCTTTGGTTTGCAAACGCGTGGGCGAAGGGCCATGCAGGGAAAGTCTTCCCAGTAGCCTAATTGAGCACTGCTGCTCTGAGCACGGTGGCAGCAGAAATCGATTGGAAACTTGGAGTGTTGTGAAATGATCCCCGTGTCTTAAACAAAAGACAGCATAAGATGAGAAAAGCGAGGGACGAGGCGGAGTTCACGACGCTCGCGGATGATCACGGCGGTGGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63114 lncRNA downstream 57559 7894880 ~ 7895159 (-) True G55499
TU63107 lncRNA downstream 70635 7881763 ~ 7882083 (-) True G55492
TU63043 lncRNA downstream 133774 7818645 ~ 7818944 (-) True G55430
TU63040 lncRNA downstream 135347 7817145 ~ 7817371 (-) True G55427
TU63029 lncRNA downstream 159146 7793358 ~ 7793572 (-) True G55416
TU63434 lncRNA upstream 144368 8098507 ~ 8102665 (-) True G55752
TU63511 lncRNA upstream 214342 8168481 ~ 8232646 (-) True G55823
TU63505 lncRNA upstream 290352 8244491 ~ 8246096 (-) True G55819
TU63501 lncRNA upstream 308027 8262166 ~ 8263697 (-) True G55815
TU63563 lncRNA upstream 323404 8277543 ~ 8278157 (-) True G55868
CI01000009_07625693_07637462.mRNA mRNA downstream 315256 7625554 ~ 7637462 (-) True CI01000009_07625693_07637462
CI01000009_07500752_07541007.mRNA mRNA downstream 411711 7500602 ~ 7541007 (-) True CI01000009_07500752_07541007
CI01000009_07383927_07391805.mRNA mRNA downstream 560724 7383654 ~ 7391994 (-) True CI01000009_07383927_07391805
CI01000009_07224625_07229839.mRNA mRNA downstream 722067 7224316 ~ 7230651 (-) False CI01000009_07224625_07229839
CI01000009_07064060_07084764.mRNA mRNA downstream 867500 7063797 ~ 7085218 (-) True CI01000009_07064060_07084764
CI01000009_08050911_08053397.mRNA mRNA upstream 96282 8050421 ~ 8053500 (-) True CI01000009_08050911_08053397
CI01000009_08058976_08066474.mRNA mRNA upstream 104485 8058624 ~ 8066778 (-) True CI01000009_08058976_08066474
CI01000009_08070105_08114631.mRNA mRNA upstream 114560 8068699 ~ 8114867 (-) True CI01000009_08070105_08114631
CI01000009_08116450_08117961.mRNA mRNA upstream 162232 8116371 ~ 8118398 (-) True CI01000009_08116450_08117961
CI01000009_08121789_08159923.mRNA mRNA upstream 166580 8120719 ~ 8159923 (-) True CI01000009_08121789_08159923
TU60944 other downstream 2447470 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 3721249 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 4690761 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 5053311 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 5390185 2551724 ~ 2562533 (-) True G52410
TU63500 other upstream 471682 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 904013 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 4334078 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 4334078 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 6021249 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile