RNA id: CI01000009_09378166_09378781.mRNA


Basic Information

Item Value
RNA id CI01000009_09378166_09378781.mRNA
length 572
RNA type mRNA
GC content 0.48
exon number 2
gene id CI01000009_09378166_09378781
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9378110 ~ 9378781 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATCTTTTATGAGGACAGGAACTTTGGCGGCCGTTACCATGAGTGCATGAGTGACTGCTCTGACCTGCATTCCTACTTCAATCGCTGTCACTCCATCAGAGTAGAAAGTGGTTGCTTCATGGTTTACGACCGAACCAACTTCATGGGACACCAGTACTTTCTAAGAAAGGGCGAGTATCCGGATTACATGCGTATGATGGGAATGAATGATTGCATCAGATCCTGTCGTATGATCCCAATGCATCGTGGGTCCTTCAGAATGAGGCTCTATGAGCGCTCTGATATGGGCGGCAGGATGATGGAGCTCACGGATGATTGCCCTAATCTTATGGACCGCTTCAATATGTCCGACTTCCATTCCTGCCATGTGATGGATGGTCACTGGCTTATGTATGAGCAGCCCAACTATATGGGCAGGCACTTCTACCTGAGGCCCGGCGAGTACAGGAGGTACAGTGACTGGGGTGGTATGAGTTCCAGGATGGGCTCTGTCAGACGAATCATGGATCTCTAATGAAAGGAGTCCTTGTGAAATGTCTGCTGTATGCCCTTTTTCACACACTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65002 lncRNA downstream 117631 9260261 ~ 9260479 (-) True G57068
TU64978 lncRNA downstream 209380 9118415 ~ 9168730 (-) True G57044
TU64971 lncRNA downstream 345360 9032227 ~ 9032750 (-) True G57037
TU64987 lncRNA downstream 428929 8948856 ~ 8949181 (-) True G57053
TU64904 lncRNA downstream 453282 8924587 ~ 8924828 (-) True G56999
TU65011 lncRNA upstream 17514 9396295 ~ 9396901 (-) True G57077
TU64951 lncRNA upstream 61464 9440245 ~ 9447216 (-) True G57020
TU65032 lncRNA upstream 81076 9459857 ~ 9460086 (-) True G57097
TU65043 lncRNA upstream 96669 9475450 ~ 9475671 (-) True G57106
TU65048 lncRNA upstream 109537 9488318 ~ 9488539 (-) True G57111
CI01000009_09375453_09376121.mRNA mRNA downstream 1989 9375181 ~ 9376121 (-) True CI01000009_09375453_09376121
CI01000009_09373830_09374425.mRNA mRNA downstream 3685 9373830 ~ 9374425 (-) True CI01000009_09373830_09374425
CI01000009_09368857_09369508.mRNA mRNA downstream 8602 9368831 ~ 9369508 (-) True CI01000009_09368857_09369508
CI01000009_09263668_09270542.mRNA mRNA downstream 105867 9263625 ~ 9272243 (-) True CI01000009_09263668_09270542
CI01000009_09125671_09199937.mRNA mRNA downstream 178173 9125671 ~ 9199937 (-) True CI01000009_09125671_09199937
CI01000009_09380339_09381069.mRNA mRNA upstream 1505 9380286 ~ 9381069 (-) True CI01000009_09380339_09381069
CI01000009_09383289_09389713.mRNA mRNA upstream 4508 9383289 ~ 9389713 (-) True CI01000009_09383289_09389713
CI01000009_09483061_09483927.mRNA mRNA upstream 102907 9481688 ~ 9484474 (-) True CI01000009_09483061_09483927
CI01000009_09494831_09498396.mRNA mRNA upstream 115971 9494752 ~ 9498396 (-) True CI01000009_09494831_09498396
CI01000009_09502714_09505047.mRNA mRNA upstream 123892 9502673 ~ 9505047 (-) True CI01000009_09502714_09505047
TU64878 other downstream 517547 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 950098 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3872862 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5146641 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6116153 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2909436 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2909436 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4596607 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4654783 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5483616 14862397 ~ 14887464 (-) True G59811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073025 False 796 mRNA 0.46 3 NC_007120.7 21993092 ~ 21994057 (+)