RNA id: CI01000009_09494831_09498396.mRNA


Basic Information

Item Value
RNA id CI01000009_09494831_09498396.mRNA
length 676
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000009_09494831_09498396
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9494752 ~ 9498396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGAAAGCGTGTTGCTGTAGTGTTGGCAGGCTGCGGTGTGTTTGATGGAAGTGAAATCCACGAGGCGTCTGCCGTTCTGGTTCATTTGAGCCGCCTGCAAGCTACTGTCAAGATATTTGCACCCAACACTGATCAGATGCATGTTGTCGATCACTTGAAAGGCTCTCCAACAGAGGAAAAGAGAAATGTGCTCGTGGAGAGTGCCAGACTTGCCCGGGGTGATATCCAAGATCTCTCGCAGCTCAATGTAAAGGATCTGGATGCCATCATCTTCCCTGGTGGATTTGGAGCAGCCAAGAACCTGTGTAGCTGGGCTGTCCAGGGCAAAGACTGCTCGGTCAATGAACAGGTTAAAACCGTGCTGCAGGCCTTCCATGCCGAGAAGAAGCCCATTGGCTTGTATCCGGATGTTCCAGACACTGCGGAAGCTATTTCTCAGCTTGGCTGCAAGCACATCTGTAAGCATGTGAATGAGGCTCATGTTGATGAGAAAAATAAGATCGTCACCACCAGTGCTTTCATGTGCAAAGCACCACTACATGAAATATTTGATGGAATTGGAGTGATGGTACAGGAGGTGCTGAAACTTGCCTGAATTCTTGCAAAATGAGTGGATTGACAGTGTCTTTCTAATGTTTGTATATAACGATTCCACATACAAGTGTCTGAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65048 lncRNA downstream 6213 9488318 ~ 9488539 (-) True G57111
TU65043 lncRNA downstream 19081 9475450 ~ 9475671 (-) True G57106
TU65032 lncRNA downstream 34666 9459857 ~ 9460086 (-) True G57097
TU64951 lncRNA downstream 47536 9440245 ~ 9447216 (-) True G57020
TU65011 lncRNA downstream 97851 9396295 ~ 9396901 (-) True G57077
TU65052 lncRNA upstream 59243 9557639 ~ 9569659 (-) True G57114
TU65143 lncRNA upstream 255352 9753748 ~ 9754109 (-) True G57176
TU65146 lncRNA upstream 268378 9766774 ~ 9769132 (-) True G57179
TU65147 lncRNA upstream 273323 9771719 ~ 9772508 (-) True G57180
TU64976 lncRNA upstream 374942 9873338 ~ 9875717 (-) True G57042
CI01000009_09483061_09483927.mRNA mRNA downstream 10278 9481688 ~ 9484474 (-) True CI01000009_09483061_09483927
CI01000009_09383289_09389713.mRNA mRNA downstream 105039 9383289 ~ 9389713 (-) True CI01000009_09383289_09389713
CI01000009_09380339_09381069.mRNA mRNA downstream 113683 9380286 ~ 9381069 (-) True CI01000009_09380339_09381069
CI01000009_09378166_09378781.mRNA mRNA downstream 115971 9378110 ~ 9378781 (-) True CI01000009_09378166_09378781
CI01000009_09375453_09376121.mRNA mRNA downstream 118631 9375181 ~ 9376121 (-) True CI01000009_09375453_09376121
CI01000009_09502714_09505047.mRNA mRNA upstream 4277 9502673 ~ 9505047 (-) True CI01000009_09502714_09505047
CI01000009_09507352_09522340.mRNA mRNA upstream 8732 9507128 ~ 9522340 (-) True CI01000009_09507352_09522340
CI01000009_09565012_09566010.mRNA mRNA upstream 66050 9564446 ~ 9568007 (-) True CI01000009_09565012_09566010
CI01000009_09644689_09665350.mRNA mRNA upstream 144920 9643316 ~ 9665830 (-) True CI01000009_09644689_09665350
CI01000009_09747388_09751284.mRNA mRNA upstream 248573 9746969 ~ 9752056 (-) True CI01000009_09747388_09751284
TU64878 other downstream 634189 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1066740 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 3989504 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5263283 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6232795 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2789821 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2789821 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4476992 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4535168 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5364001 14862397 ~ 14887464 (-) True G59811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073017 True 778 lncRNA 0.49 3 NC_007120.7 21826734 ~ 21829744 (+)