RNA id: CI01000009_09791141_09791496.mRNA


Basic Information

Item Value
RNA id CI01000009_09791141_09791496.mRNA
length 615
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000009_09791141_09791496
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9791141 ~ 9791878 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATGTTATCTGTGTGAATGTATAGTCTGTTCTCGAAATATGGGCATGCGTACATGTTTCGCTTTTCAGCTATTGTTGGATTTTAGCGCGATTGTACTCGCTCGGCCACCGTAGTTGAAACACGTGTGAAGCCGTTTCTGTTCTGTGTGCAAGTTACTGCTTGAAAACTCTGTAACGGCGTTGTTCATTGGTAAGGTTTAACTTTTAACTTTTTTTGAATTTTAAAGTCTGGTTAAAACGTAAGTTACTTCTATATTAAATATCGTTTGAGACAGTTAGCAAAAGCTGTTAGCATCATTTTTTGAATGAGCGTTATACTGAATGTTTCTTCAGCATTCCTCATTCCCGTGTCATTTTGTATTAAATAAAGGATCTGTTACAATGAGTGACAGTGACGATGATGTGCCTCAGCTCTCCACGGCGACACTTGCTGCGTTGCAAGAGTTTTATGCTGAGAGTGGAAGGACGGGACTGGAACAAGAATCGATCCAGACCGACAAGTTCTGTGTTGGTGCCGTGGAGGAAGACTGGCGCATGAGTCAGTTCTGGTACAGTGAAGACACGGCCACACGGTTAGCAGAGGAAGTCATGCAGCAGGCTGGAGAACATGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65147 lncRNA downstream 18633 9771719 ~ 9772508 (-) True G57180
TU65146 lncRNA downstream 22009 9766774 ~ 9769132 (-) True G57179
TU65143 lncRNA downstream 37032 9753748 ~ 9754109 (-) True G57176
TU65052 lncRNA downstream 221482 9557639 ~ 9569659 (-) True G57114
TU65048 lncRNA downstream 302602 9488318 ~ 9488539 (-) True G57111
TU64976 lncRNA upstream 81460 9873338 ~ 9875717 (-) True G57042
TU64909 lncRNA upstream 116922 9908800 ~ 9910481 (-) True CI01000009_09908895_09911939
TU65158 lncRNA upstream 123310 9915188 ~ 9915459 (-) True G57189
TU65187 lncRNA upstream 172452 9964330 ~ 9964556 (-) True G57210
TU65196 lncRNA upstream 194195 9986073 ~ 9986491 (-) True G57219
CI01000009_09787635_09787950.mRNA mRNA downstream 3191 9786122 ~ 9787950 (-) True CI01000009_09787635_09787950
CI01000009_09764731_09769444.mRNA mRNA downstream 21697 9764592 ~ 9769444 (-) True CI01000009_09764731_09769444
CI01000009_09756032_09759196.mRNA mRNA downstream 31945 9754836 ~ 9759196 (-) True CI01000009_09756032_09759196
CI01000009_09747388_09751284.mRNA mRNA downstream 39085 9746969 ~ 9752056 (-) True CI01000009_09747388_09751284
CI01000009_09644689_09665350.mRNA mRNA downstream 125311 9643316 ~ 9665830 (-) True CI01000009_09644689_09665350
CI01000009_09792753_09812884.mRNA mRNA upstream 171 9792049 ~ 9813334 (-) True CI01000009_09792753_09812884
CI01000009_09817498_09826525.mRNA mRNA upstream 25369 9817247 ~ 9826525 (-) True CI01000009_09817498_09826525
CI01000009_09836011_09846297.mRNA mRNA upstream 42873 9834751 ~ 9848630 (-) True CI01000009_09836011_09846297
CI01000009_09851362_09853119.mRNA mRNA upstream 58114 9849992 ~ 9853119 (-) True CI01000009_09851362_09853119
CI01000009_09855740_09859027.mRNA mRNA upstream 63862 9855740 ~ 9859027 (-) True CI01000009_09855740_09859027
TU64878 other downstream 930578 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1363129 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4285893 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5559672 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6529184 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2496339 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2496339 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4183510 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4241686 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 5070519 14862397 ~ 14887464 (-) True G59811

Expression Profile